Input parameters:

  Query = CmaCh11G019470 (Len=377)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CmaCh11G019470, Len=377):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MTAIAVHGFAQCITCHAWSPDHSMVAFCPNNNEVHIYKSVQDNWERIHVLQKHDQIISGIDWSVKSNRIVTASHDRNSYV 80  
WD40-rpts      (________________WD 1________________)     (_________________WD 2_______________

Query       81 WNLEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTNVAWHPNNLLLA 160 
WD40-rpts      _)     (_________________WD 3________________)  (___________________WD 4________

Query      161 TTSTDGKCRIFSTFIKGVDTKDSKAGAFSDSKFGELIVQLDLSFSWAFGVKWSPSGKTLAYAGHNSMIYFVDEIGPSPLA 240 
WD40-rpts      ___________)                     (_________________WD 5________________)    (___

Query      241 QNVALRDLPLRDILFVSERMVIGVGFDCNPMVFAADERGIWSFIRFLGERKTASASKYGSQFSEAFGKLYGQPRQDVGNE 320 
WD40-rpts      _____________WD 6________________) (__________________WD 7__________________)(__

Query      321 SVESSRLRGIVHENCINCIVPLRERRVSTIKRFSTSGLDGKVVIWDLEGQADLSQYL 377 
WD40-rpts      ____________________WD 8_____________________)           

8 WD40-repeats found in QUERY=CmaCh11G019470 (Len=377):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-38       8.08  448.60  5.6e-05       12.5%     51.52
  WD 2:  Seg  5    44-82       8.98  485.45  1.8e-05       25.0%     53.76
  WD 3:  Seg  9    88-126      7.14  409.74  0.00019       15.0%     56.12
  WD 4:  Seg 13   129-172      8.65  472.07  2.7e-05       25.0%     53.27
  WD 5:  Seg 17   194-232      7.89  440.43  7.2e-05       30.0%     57.01
  WD 6:  Seg 21   237-274      5.54  343.54  0.00146       10.0%     51.92
  WD 7:  Seg 25   276-317      6.64  388.96  0.00036       12.5%     41.37
  WD 8:  Seg 29   318-366      6.53  384.35  0.00041       20.0%     50.96

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-38     --M----TAIAVHGFAQCITCH-----AWSPDHSMVAF--CPNNNEVHIYK
   WD 2   44-82     -WE----RIHVLQKHDQIISGI-----DWSVKSNRIVT--ASHDRNSYVWN
   WD 3   88-126    -WV----PTLVILRLNRAALCV-----QWSPKENKFAV--GSGAKTVCICY
   WD 4  129-172    QENNWWVSKLIRKRHDSSVTNV-----AWHPNNLLLAT--TSTDGKCRIFS
   WD 5  194-232    -GE----LIVQLDLSFSWAFGV-----KWSPSGKTLAY--AGHNSMIYFVD
   WD 6  237-274    -SP----LAQNVALRDLPLRDI-----LFVSERMVIGV--GF-DCNPMVFA
   WD 7  276-317    DER----GIWSFIRFLGERKTA-----SASKYGSQFSEAFGKLYGQPRQDV
   WD 8  318-366    GNESVESSRLRGIVHENCINCIVPLRERRVSTIKRFST--SGLDGKVVIWD

   WD40 Template    TGE----CLRTLSGHTSGVTSV-----SFSPDGKRLVS--GSEDGTIKVWD