Input parameters:

  Query = sp_O42948_YBPD_SCHPO (Len=1026)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (sp_O42948_YBPD_SCHPO, Len=1026):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MDWVALSKSCKTHLLDEGLDVSSIHCFDQYLIVGQCSGQVMVFDVSTDNHFTLIQTFIAHKHSVSSIVCLPFEADGIVDL 80  
WD40-rpts                                                                                      

Query       81 SIITLDESGLLCQWLLKTCDRRATLQLCDGLCLKLFRLNNNFLAVTGTFLKIYLIRISNFQIVATWTGHEDWPILFPFKD 160 
WD40-rpts                                                                                      

Query      161 EALLIPVAYSDGSVSLWSVDWSALTFKRNSVTKADVKPTFGKVIDVVPADCISSNYALYVYSDAVVLLESHEKFIASYSL 240 
WD40-rpts                                                                                      

Query      241 AEITSVFVLADGTACIFTLSSSTLLKLHQSPEPHFELISKYSGDFPWKSCTILKSKPVSLCVYPEKITFNWLTEGTVDSC 320 
WD40-rpts                                                                                      

Query      321 NLCKLSNTAAVSYAYTDSLNLFLGTTSGLVMFSLFDWYLHNDPAPLYSFTRVSGIVTYMKIFETEHSRSILVVATKTGKA 400 
WD40-rpts                                                                                      

Query      401 YFYQQLQGERWRFLCERALQSSSITKIIHAKKSLSSGSSGLFIFMSLDGSLCALDESYNLLSYLPSDGAQVETLYSFPDL 480 
WD40-rpts                                                                                      

Query      481 DQIYVAYDNFQLLNWDVVDQKCSEGNYSDIIDSSFISIGTFDKSNLPTLYHGSCALLTDNLVTVFLDAHDLVLNLNFSNE 560 
WD40-rpts                                                                                      

Query      561 NYIEKTYIDEFLDFIQPPFLNSDIEMEHQLLGTVFDQSSLHLGVGKPDGNAILRFDTEMKSIINTAPNCSALLLYLYFSL 640 
WD40-rpts                                                                                      

Query      641 MVPLCKYDGLSDTKLTEGILLKLKDLKTVDYSISVLSYVWNNSGKVMQGIIKSMLSRTLELISPEELQRLIYYYFEFFTT 720 
WD40-rpts                                                                                      

Query      721 TGGEYYLKKEVQHSLYILSLIVSLRPSAFDVSQLKFLSSYLLQKSESMDYDLTAIRLLSNGFSVFSKHIDPAKFIYNLVL 800 
WD40-rpts                                                                                      

Query      801 SSLENTKDLDDKNSILYRSIVDVSVSNAVLLLTCLCDEVYEQMKSNLRSVILKVVSLAIENTQSEFSLFNQLITEKLLPI 880 
WD40-rpts                                                                                      

Query      881 LYSSRSVEEVHDVTNAIATQFPFACFDSKVEKYSYIDDGDLVVYEIAKRRKVVSKENAECDIQVLSASPSGDYFVGVSAT 960 
WD40-rpts                                                      (_________________WD 1__________

Query      961 QKECIIWKYSQDFVKFLNLSTPSLTIRKRILLQTNKTNEVEIPEVLWISQSSAEVHIGSTFAIIDL 1026
WD40-rpts      _______)                                                          

1 WD40-repeats found in QUERY=sp_O42948_YBPD_SCHPO (Len=1026):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 41   929-968      5.97  361.28  0.00084       17.5%     52.47

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  929-968    RRKVVSKENAECDIQVLSASPSGDYFVGVSATQKECIIWK

   WD40 Template    GECLRTLSGHTSGVTSVSFSPDGKRLVSGSE-DGTIKVWD