Input parameters:

  Query = CsaV3_3G004320 (Len=445)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CsaV3_3G004320, Len=445):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSHYHEDDTDYMADEYEMEDIDDDMDDECHDREDEGSDSDADEFNSSSRIVDTTAAQARRGIDIQGIPWERLSITREKYR 80  
WD40-rpts                                                                                      

Query       81 KTRLEQYKNYENIPNSGEGSEKDCKVTDKACSYYEFCRNSRSVKSTILHFQLRNLVWSTSKHDAYLLSNFSVIHWSSLSY 160 
WD40-rpts                                           (_________________WD 1_________________)   

Query      161 TKSDVLNVAGHVAPTEKHPGSLLEGFTQTQVSTLAVKDKLLVAGGFQGELICKHLDRPGVSFCFRTTYDDNAITNAVEIY 240 
WD40-rpts                 (___________________WD 2__________________)      (__________________W

Query      241 TSASGAIHFTASNNDSGVRDFDMEKFQLSKHFCFPWPVNHAALNPDGKLLVIVGDNPEGLLVDSQTGKTVASLSGHLDFS 320 
WD40-rpts      D 3__________________)(__________________WD 4_________________)   (_____________

Query      321 FASAWHSDGITFATGNQDKTCRIWDVRNLSKSVAALKGNLGAIRSIRYSSDGRYMAMAEPADFVHVFDVKSGYEKEQEID 400 
WD40-rpts      ____WD 5________________)    (_________________WD 6________________)   (________

Query      401 FFGEISGVSFSPDTESLFIGVWDRTYGSLLEYHRRRNYSYLDSLY 445 
WD40-rpts      _________WD 7_________________)              

7 WD40-repeats found in QUERY=CsaV3_3G004320 (Len=445):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2   118-157      5.86  356.87  0.00096        7.5%     40.06
  WD 2:  Seg  7   172-214      5.29  333.32  0.00200       20.0%     44.23
  WD 3:  Seg 11   221-262      6.02  363.49  0.00079       15.0%     51.45
  WD 4:  Seg 15   263-303      7.40  420.38  0.00013       22.5%     57.97
  WD 5:  Seg 19   307-345     10.09  531.54  4.3e-06       30.0%     54.34
  WD 6:  Seg 23   350-388      8.94  484.00  1.9e-05       20.0%     55.37
  WD 7:  Seg 27   392-431      6.95  401.69  0.00024       27.5%     51.82

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  118-157    RN----S-RSVKSTILHFQLRNLV---WSTSKHDAYLLSNFSVI-HWSS
   WD 2  172-214    VAPTEKH-PGSLLEGFTQ-TQVST---LAVKDKLLVAGGFQGEL-ICKH
   WD 3  221-262    -S----F-CFRTTYDDNAITNAVEIYTSASGAIHFTASNNDSGV-RDFD
   WD 4  263-303    ME----KFQLSKHFCFPWPVNHAA---LNPDGKLLVIVGDNPEG-LLVD
   WD 5  307-345    -G----K-TVASLSGHLDFSFASA---WHSDGITFATGNQDKTC-RIWD
   WD 6  350-388    -S----K-SVAALKGNLGAIRSIR---YSSDGRYMAMAEPADFV-HVFD
   WD 7  392-431    -G----Y-EKEQEIDFFGEISGVS---FSPDTESLFIGVWDRTYGSLLE

   WD40 Template    TG----E-CLRTLSGHTSGVTSVS---FSPDGKRLVSGSEDGTI-KVWD