Input parameters:

  Query = CsaV3_1G006160 (Len=437)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CsaV3_1G006160, Len=437):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MEGSFEQTLQDGQLYRQVNSLIVAHLRDHNLTQAASAAASATMTPLNVDVPPKKLMELVAKGLAVEKDETLRGSPASALY 80  
WD40-rpts                                                                   (__________________

Query       81 EFGSSMPTTFGSAQPSRPSAIDFSTTQDTKGSSKNFPKHETRHLSEHKNVARCARFSADGRFVATGSADMSIKLFEVAKI 160 
WD40-rpts      ______WD 1________________________)  (_________________WD 2________________)    

Query      161 KQMMLPDAKDGPVRPVIRTFYDHIQPINDLDFHPQNTVLVSGAKDHTIKFFDFSKLTAKKAFRVIQDTHNVRSISLHPSG 240 
WD40-rpts                   (_________________WD 3________________)(___________________WD 4____

Query      241 DYLLAGTDHQIPHLYDVNTFQCFLSANVPEIGNNGAINQIRYSATGSMYVTASKDGAVRLWDGIGAKCIRSIVSAHGTAE 320 
WD40-rpts      _______________)   (___________________WD 5__________________)   (______________

Query      321 ATSAKFTKDERYVLSCGKDSSVKLWDVGTGRLVKQYVGATHIQLRCQAVFNDTEEFVLSIDEPSNEIVIWDALTAERVAR 400 
WD40-rpts      ____WD 6_________________)   (__________________WD 7__________________)    (____

Query      401 WPSNHVGAPRWLEHSPTESAFISCGTDKSIRFWKESL 437 
WD40-rpts      _____________WD 8________________)   

8 WD40-repeats found in QUERY=CsaV3_1G006160 (Len=437):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    62-115      3.08  241.85  0.03375       15.0%     28.17
  WD 2:  Seg  4   118-156      8.83  479.57  2.1e-05       32.5%     54.34
  WD 3:  Seg  8   174-212      8.85  480.13  2.1e-05       35.0%     52.26
  WD 4:  Seg 12   213-256      8.19  453.13  4.9e-05       22.5%     56.39
  WD 5:  Seg 16   260-302      8.69  473.42  2.6e-05       25.0%     55.81
  WD 6:  Seg 20   306-346      8.71  474.59  2.5e-05       30.0%     56.48
  WD 7:  Seg 24   350-391      5.99  362.15  0.00082       20.0%     54.55
  WD 8:  Seg 27   396-434      7.93  442.09  6.8e-05       22.5%     46.42

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   62-115    GLAV----EKDETLRGSPASALYEF----GS--SMP--TTFGSAQPSRPSAI-DFSTTQDTKGSSKN
   WD 2  118-156    -KHE----TR------------HLS----EH--KNV--ARCARFSADG--RF-VATGSADMSIKLFE
   WD 3  174-212    -RPV----IR------------TFY----DH--IQP--INDLDFHPQN--TV-LVSGAKDHTIKFFD
   WD 4  213-256    FSKLTAKKAF------------RVI----QD--THN--VRSISLHPSG--DY-LLAGTDHQIPHLYD
   WD 5  260-302    -FQC----FL------------SANVPEIGN--NGA--INQIRYSATG--SM-YVTASKDGAVRLWD
   WD 6  306-346    -AKC----IR------------SIV----SAHGTAE--ATSAKFTKDE--RY-VLSCGKDSSVKLWD
   WD 7  350-391    -GRL----VK------------QYV----GA--THIQLRCQAVFNDTE--EFVLSIDEPSNEIVIWD
   WD 8  396-434    -ERV----AR------------WPS----NH--VGA--PRWLEHSPTE--SA-FISCGTDKSIRFWK

   WD40 Template    TGEC----LR------------TLS----GH--TSG--VTSVSFSPDG--KR-LVSGSEDGTIKVWD