WDRR: WD40 Repeat Recognition
| [HOME] [JOB LIST] [PRE-CALCULATED RESULTS] [VISITORS] [ABOUT] |
| JobID: UVNNZ1659500898 Submitted: 2022-08-03 12:28:18 You can bookmark this page for further accessing the result in the future. Results on this server will be retained for 30 days. Job status: [Done] Total run time: 79750948 seconds. [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = CmaCh13G006770 (Len=734) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (CmaCh13G006770, Len=734): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MGSASTLPQESSPSSDPSYSSNSGSDGIVSDVLKSFLDKYGKQWDGREALRVTGKTPYESAAVIIEDYELPCTSTELMSQ 80
WD40-rpts
Query 81 VSPMFADRWCNIKALPGANRLIKHFTAHKVPMALASNSSRENIETKISFHPGMAAGMKVVAVPSLPKTTNLYSSADEVIN 160
WD40-rpts (____________________WD 1_________
Query 161 SLLDFQPEKWGLPPFEDWVENTLPIHPMYIGGPVVKGYGRGSKVLGIPTANLSTEGYSDVLLEHPSGVYFGWAGLSTRGI 240
WD40-rpts __________)
Query 241 FKMVASIGWNPFFDNAEKTIEPWLLHEFHEDFYGEDLRLVLVGYIRPEWRNEGTLDTDCCLGVLAMSETESMLVEEEENK 320
WD40-rpts (__________________WD 2_________________)
Query 321 SNPAGEAAEAAMNEEQQSYSWPVIQFNSPPQRTYHFYNQFRTGPNPNNFFKGVKWSPDGSCFLTSSEDNSLRRFNLPDYG 400
WD40-rpts (_________________WD 3________________)
Query 401 NDVSGNVAGEEDSFTSNLVVGEGESVYDFCWYPYMSASDPVTCVFASTTRDHPIHLWDAASGELRCTYRAYDAMDEITAA 480
WD40-rpts (________________WD 4________________) (__________________
Query 481 FSISFNPAGTKIFAGYNKLVRIFDLHRPGRDFGQHSTLKGNKEGQTGIISAIAFSPTHNGMLALGSYSQTTGIYREDNME 560
WD40-rpts _WD 5__________________) (_________________WD 6_________________) (_
Query 561 LLYVLHGQEGGITHVGEIQFSRDGNYLYTGGRKDPYILCWDIRKSVDVVYKFPYHVILLVIRLYRSSEHTNQRIFFDIEP 640
WD40-rpts __________________WD 7__________________) (_____________________WD 8___
Query 641 CGQHLGTGGQDGFVHVYDLQTGQWVTSFQAAQDTVNGFSFHPYMPMTVTSSGHRRFIGPDNDDADLCLRGDENCASVWSF 720
WD40-rpts _________________) (_________________WD 9________________) (_____________WD1
Query 721 NFASSGDGDAINTN 734
WD40-rpts 0____________)
 10 WD40-repeats found in QUERY=CmaCh13G006770 (Len=734): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 3 127-171 3.65 265.44 0.01637 7.5% -19.31 WD 2: Seg 7 265-305 5.65 347.92 0.00127 15.0% 17.95 WD 3: Seg 12 357-395 9.18 493.88 1.4e-05 25.0% 52.51 WD 4: Seg 17 421-458 5.74 351.80 0.00113 15.0% 23.67 WD 5: Seg 20 462-504 6.80 395.40 0.00029 25.0% 54.07 WD 6: Seg 24 516-555 7.25 414.16 0.00016 22.5% 47.01 WD 7: Seg 27 559-601 7.41 420.91 0.00013 40.0% 56.06 WD 8: Seg 32 612-658 8.71 474.34 2.5e-05 30.0% 56.20 WD 9: Seg 36 662-700 8.65 472.00 2.7e-05 20.0% 50.75 WD10: Seg 39 704-734 3.28 249.95 0.02634 10.0% 30.71Multiple sequence alignment of 10 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 127-171 IS-------FHPGMAAGMKV-----V---AVPSLPK-TTNL-YSSADEVINSL-LDFQPEKWG WD 2 265-305 LH-------EFHEDFYGEDL-----R---LVLVGYIRPEWR-NEGT-----LD-TDCCLGVLA WD 3 357-395 -Y-------NQFRTGPNPNN-----F---FKGVKWS-PDGS-CFLT-----SS-EDNSLRRFN WD 4 421-458 GE-------G--ESVYDFCW-----Y---PYMSASD-PVTC-VFAS-----TT-RDHPIHLWD WD 5 462-504 -G-------ELRCTYRAYDAMDEITA---AFSISFN-PAGT-KIFA-----GY--NKLVRIFD WD 6 516-555 -S-------TLKGNKEGQTG-----I---ISAIAFS-PTHNGMLAL-----GS-YSQTTGIYR WD 7 559-601 -M-------ELLYVLHGQEG-----GITHVGEIQFS-RDGN-YLYT-----GGRKDPYILCWD WD 8 612-658 FPYHVILLVIRLYRSSEHTN-----Q---RIFFDIE-PCGQ-HLGT-----GG-QDGFVHVYD WD 9 662-700 -G-------QWVTSFQAAQD-----T---VNGFSFH-PYMP-MTVT-----SS-GHRRFIGPD WD10 704-734 -A-------DLCLRGDENCA-----S---VWSFNFA-SSGD-GDAI-----NT---------N WD40 Template TG-------ECLRTLSGHTS-----G---VTSVSFS-PDGK-RLVS-----GS-EDGTIKVWD |
|
Copyright © 2012-2015 Ziding Zhang's Lab, China Agricultural University Powered and maintained by Chuan Wang Last modified: 09 Jan 2019 |