Input parameters:

  Query = CsaV3_1G040350 (Len=475)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CsaV3_1G040350, Len=475):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MVRSIKNRKKAKRKSKGSSNGVAASSSSIPSVPAKVWRPGVDKLEEGEELQCDPTAYNSLHAFNISWPSLSFDIVRDTLG 80  
WD40-rpts                                                                                      

Query       81 LVRTEFPHTIYFVAGTQAEKASWNSIGIYKISNISGKRRELLPSKPVTDDTDMDSDSSDSDEDDEGEENGGYKLPVWQLR 160 
WD40-rpts                      (______________________WD 1______________________)              

Query      161 KVAHEGCVNRIRAMQQNPHICASWADGGHVQIWDFSSHLNTLAGSEPTVSPGDSSVFNQAPLTLFKHKDEGYALDWSPLV 240 
WD40-rpts        (_____________WD 2_____________)                       (_________________WD 3_

Query      241 PGRLLSGDCKSFIHLWEPSSATSWNVDTAPFVGHSASVEDLQWSPTEPHVFSSCSADGNVAIWDVRSGKSPAASFKAHNA 320 
WD40-rpts      ________________)(_____________________WD 4____________________)    (___________

Query      321 DVNVISWNRLASCMLASGSDDGTFSIHDLRLLKEGDSVVAHFEYHKQPITSIEWSPHEASTLAVSSADNQLTIWDLSLEK 400 
WD40-rpts      ______WD 5_________________)       (_________________WD 6_________________)     

Query      401 DEEEEAEFKAKTQEQVNAPEDLPPQLLFVHQGQNDLKELHWHAQIPGMIVSTAADGFNILMPSNIQTTLPSDAAA 475 
WD40-rpts                                                                                 

6 WD40-repeats found in QUERY=CsaV3_1G040350 (Len=475):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  4    97-146      5.30  333.74  0.00198       17.5%      4.60
  WD 2:  Seg  6   163-194      4.09  283.81  0.00929       15.0%     46.77
  WD 3:  Seg  9   218-257      5.23  330.87  0.00216       27.5%     50.13
  WD 4:  Seg 13   258-304      6.87  398.43  0.00027       27.5%     48.91
  WD 5:  Seg 16   309-348      6.93  401.04  0.00024       27.5%     52.77
  WD 6:  Seg 20   356-395      7.33  417.64  0.00015       25.0%     53.01

Multiple sequence alignment of 6 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   97-146    QAEKASWNSIGIYK------ISNISGKRRELLPSKPVT-DDT-DMDSDSSDSDEDDEG
   WD 2  163-194    -------------------------AHEGCVNRIRAMQQNPH-ICASWADGGHVQIWD
   WD 3  218-257    -NQ----------A------PLTLFKHKDEGYALDWSPLVPG-RLLSGDCKSFIHLWE
   WD 4  258-304    PSS----------ATSWNVDTAPFVGHSASVEDLQWSPTEPH-VFSSCSADGNVAIWD
   WD 5  309-348    -KS----------P------AASFKAHNADVNVISWNR-LASCMLASGSDDGTFSIHD
   WD 6  356-395    -DS----------V------VAHFEYHKQPITSIEWSPHEAS-TLAVSSADNQLTIWD

   WD40 Template    TGE----------C------LRTLSGHTSGVTSVSFSP-DGK-RLVSGSEDGTIKVWD