Input parameters:

  Query = CmaCh14G012960 (Len=330)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CmaCh14G012960, Len=330):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MIFHRDQLRGKSSTNSSSYYSLLNLKPEKMPAQKIETGHQDTIHDVAMDYYGKRVASASSDQTIKITGVSNSATQHLATL 80  
WD40-rpts                                      (_______________WD 1_______________)(___________

Query       81 TGHLGPVWQVAWAHPKFGSLLASCSYDGRVILWKEGNQNEWSQAHIFDDHKSSVNSIAWAPHEVGLCLACGSSDGNISVF 160 
WD40-rpts      _________WD 2____________________)(_____________________WD 3____________________

Query      161 TARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSALLDPVQKLCSGGCDNTVKVWKLYNGVWKMDCFPALQMHTDW 240 
WD40-rpts      )      (________________________WD 4_______________________)       (____________

Query      241 VRDVSWAPNLGLPKSTIASASQDGKVVIWTVVREGDQWEGKVLKDFKTPVWRVSWSLTGNILAVADGNNNVSLWKEAVDS 320 
WD40-rpts      _______WD 5__________________)      (_________________WD 6________________)     

Query      321 DWQQVSTVEP 330 
WD40-rpts                

6 WD40-repeats found in QUERY=CmaCh14G012960 (Len=330):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3    33-68       8.68  473.20  2.6e-05       30.0%     48.70
  WD 2:  Seg  6    69-114      7.96  443.44  6.6e-05       35.0%     58.52
  WD 3:  Seg 10   115-161      7.97  443.88  6.5e-05       35.0%     57.54
  WD 4:  Seg 14   168-220      7.47  423.36  0.00012       42.5%     52.07
  WD 5:  Seg 18   228-270      8.09  448.82  5.6e-05       32.5%     53.89
  WD 6:  Seg 22   277-315      8.17  452.22  5.0e-05       20.0%     54.09

Multiple sequence alignment of 6 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   33-68     ---------QKIETGHQDTIHDVAMDYY----G--------------KRVASASSDQTIKITG
   WD 2   69-114    VS-NSATQHLATLTGHLGPVWQVAWAHP--KFG--------------SLLASCSYDGRVILWK
   WD 3  115-161    EGNQNEWSQAHIFDDHKSSVNSIAWAPH--EVG--------------LCLACGSSDGNISVFT
   WD 4  168-220    -W-----DTSRIDQAHPVGVTSVSWAPS----TAPGALVGSALLDPVQKLCSGGCDNTVKVWK
   WD 5  228-270    -M-----DCFPALQMHTDWVRDVSWAPNLGLPK--------------STIASASQDGKVVIWT
   WD 6  277-315    -Q-----WEGKVLKDFKTPVWRVSWSLT----G--------------NILAVADGNNNVSLWK

   WD40 Template    TG-----ECLRTLSGHTSGVTSVSFSPD----G--------------KRLVSGSEDGTIKVWD