Input parameters:

  Query = CmaCh09G005870 (Len=761)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CmaCh09G005870, Len=761):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MEDFAFHDGNVCGLLESRHINFRQDPTYSFPMHSSFIQRLSQEKELEGHQGCVNAVAWNSRGSLLISGSDDTRINIWSYS 80  
WD40-rpts      (_______________WD 1_______________)   (_________________WD 2________________)(_

Query       81 GQKLLHSVETGHSANIFCTKFVPETSDELVVSGAGDAEVRLFNLSRLKGRRHDDSPIASSALYQCHTRRVKKLAVEIGNP 160 
WD40-rpts      ___________________WD 3___________________)             (_________________WD 4__

Query      161 NVVWSASEDGTLRQHDFREGMSCSPEGASHQECHNVLLDLRCGAKRSLADPPRQTLALKSCDISSTRPHLLLVGGSDAFA 240 
WD40-rpts      _______________)                             (_________________WD 5_____________

Query      241 RLYDRRMLPPLSSSQKRMSPPPCVNYFCPMHLSERVRQGLHLTHVTFSPNGEEILLSYSGEHVYLMNVNHAGLGTMQYTS 320 
WD40-rpts      ___)                       (_________________WD 6_________________)   (_________

Query      321 GDVSKLMSFTPILNGLELQHPVSNLSNGLPLNGGVNAKLDKCRKLLQIAEKCLEGGNYFGGIEACNEILDGFGRIIGVIL 400 
WD40-rpts      ________WD 7________________)   (___________________WD 8__________________) (___

Query      401 KHDSLCSRAALLLKRKWKNDVHMAIRDCYSARKIDNSSFRAHYYMCEALSQLGRHKEALDFAFAAQCLAPSNPEVAEKVE 480 
WD40-rpts      ______________WD 9________________)                                             

Query      481 SIKRDLAAAELEKSNKDNDGAIRSAPLGGVLSLSDLLHRSDANSDVSQDGVRSEREDSDYDDEVELDFETLSGDEAQDVD 560 
WD40-rpts                           (________________WD10_______________)      (_______________

Query      561 SNVLHGSVNLRIHRRVDPAIERVGANGSCGSPSSSHNDGILYQPEPVIDMKQRYVGHCNIGTDIKQASFLGQRGEYVASG 640 
WD40-rpts      __WD11_________________)                       (___________________WD12_________

Query      641 SDDGRWFIWEKKTGRLIKILVGDGAVVNCVQSHPFDCAIATSGIDNTIKLWTPTAPVRSVVAGGAIGPQAADVLAAIENN 720 
WD40-rpts      _________)   (_________________WD13________________)(______________WD14_________

Query      721 QRRLCRNREAILPFEILERMHAEIGIVIVGGVAVSTPNILL 761 
WD40-rpts      _____)                                   

14 WD40-repeats found in QUERY=CmaCh09G005870 (Len=761):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-36       6.50  383.28  0.00043        7.5%     29.79
  WD 2:  Seg  4    40-78       9.33  500.13  1.1e-05       32.5%     55.08
  WD 3:  Seg  8    79-123      6.61  387.63  0.00037       20.0%     51.91
  WD 4:  Seg 12   137-176      6.00  362.71  0.00081       25.0%     45.25
  WD 5:  Seg 16   206-244      5.83  355.56  0.00100       12.5%     35.25
  WD 6:  Seg 21   268-307      8.78  477.41  2.3e-05       17.5%     46.24
  WD 7:  Seg 24   311-349      6.02  363.33  0.00079       10.0%     21.53
  WD 8:  Seg 26   353-395      3.41  255.36  0.02231       12.5%     20.68
  WD 9:  Seg 28   397-435      3.43  256.23  0.02172       10.0%     31.30
  WD10:  Seg 32   502-538      5.97  361.07  0.00085       10.0%     31.14
  WD11:  Seg 35   545-584      4.07  282.84  0.00957       17.5%     46.31
  WD12:  Seg 40   608-650      6.93  400.88  0.00025       25.0%     44.57
  WD13:  Seg 44   654-692      8.80  478.18  2.2e-05       27.5%     55.39
  WD14:  Seg 48   693-726      4.51  301.11  0.00544       10.0%     25.85

Multiple sequence alignment of 14 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-36     -------MEDFAFHDGNVC-GL----LESRH--INF-RQDPTYSF----PMHSSF
   WD 2   40-78     -LS---QEKELEGHQGCVN-AV----AWNSR--GSL-LISGSDDT----RINIWS
   WD 3   79-123    YSGQKLLHSVETGHSANIF-CT----KFVPETSDEL-VVSGAGDA----EVRLFN
   WD 4  137-176    -IA---SSALYQCHTRRVK-KL----AVEIG--NPNVVWSASEDG----TLRQHD
   WD 5  206-244    -RS---LADPPRQTLALKS-CD----ISSTR--PHL-LLVGGSDA----FARLYD
   WD 6  268-307    CPM---HLSERVRQGLHLT-HV----TFSPN--GEE-ILLSYSGE----HVYLMN
   WD 7  311-349    -AG---LGTMQYTSGDVSK-LM----SFTPI--LNG-LELQHPVS----NLSNGL
   WD 8  353-395    -GG---VNAKLDKCRKLLQ-IA----EKCLE--GGN-YFGGIEACNEILDGFGRI
   WD 9  397-435    -GV---ILKHDSLCSRAAL-LL----KRKWK--NDV-HMAIRDCY----SARKID
   WD10  502-538    ------IRSAPLGGVLSLS-DL----LHRSD--ANS-DVSQDGVR----SEREDS
   WD11  545-584    -EL---DFETLSGDEAQDVDSN----VLHGS--VNL-RIHRRVDP----AIERVG
   WD12  608-650    -ID---MKQRYVGHCNIGT-DIKQASFLGQR--GEY-VASGSDDG----RWFIWE
   WD13  654-692    -GR---LIKILVGDGAVVN-CV----QSHPF--DCA-IATSGIDN----TIKLWT
   WD14  693-726    ---------PTAPVRSVVA-GG----AIGPQ--AAD-VLAAIENN----QRRLCR

   WD40 Template    TGE---CLRTLSGHTSGVT-SV----SFSPD--GKR-LVSGSEDG----TIKVWD