WDRR: WD40 Repeat Recognition
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| JobID: UQE1N1659514066 Submitted: 2022-08-03 16:07:46 You can bookmark this page for further accessing the result in the future. Results on this server will be retained for 30 days. Job status: [Done] Total run time: 79732928 seconds. [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = CsaV3_1G039890 (Len=1538) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (CsaV3_1G039890, Len=1538): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MGNKIARTTQVSDTEFYLHDLPSSYNLVLKEVLARGRFLKSILCKHDEGLVLVKVYFKRGDSIDLKEYERRLSQIKEIFL 80
WD40-rpts
Query 81 ALPHPHVWPFQIWQETDKAAYVLRQYFFNNLHDRLSTRPFLSVIEKKWLAFQLLLAVKQSHEKGICHGDIKCENVLVTSW 160
WD40-rpts
Query 161 NWLYLADFASFKPTYIPYDDPSDFYFYYDSGGRRLGYLAPERFYEHGGELQDAHDAPLRPSMDIFSVGCVIAELFLEGQP 240
WD40-rpts
Query 241 LFERQQLISYRRGQYDPSQHLEKIPDSGIRKMILHMIQLEPELRLSAENYLQDYANVVFPNYFSPFLHNFYCCWNPLHSD 320
WD40-rpts
Query 321 TRVALCQKVFPKILEQMTSCGSGLTGTEKGSPTNNTSGLSQDMNTKQNENLTRLESTEKGLPRDQFELLGDVDTLFRDVK 400
WD40-rpts
Query 401 QNNYCSGSEQLLEDAATKNITNCVDQSPGELFHSISNAFRKNDHPFLQKITMSNLSSLMSSYDSQSDTFGMPFLPLPEDS 480
WD40-rpts
Query 481 MKCEGMVLIASLLCSCIRNVKLPHLRRAAILLLRSSALYIDDEDRLQRVLPYVIAMLSDSAAIVRCAALETLCDILPLVR 560
WD40-rpts
Query 561 DFPPSDAKIFPEYILPMLSMIPDDPEESVRICYASNIAKLALTAYGFLIHSMSFREAGVLDKLSIPQKPSAPSSETSGQL 640
WD40-rpts
Query 641 GKLHGDVQLAQLRKSIAEVVQELVMGPKQTPCIRRALLKDIGNLCCFFGQRQSNDFLLPILPAFLNDRDEQLRAVFYGQI 720
WD40-rpts
Query 721 VYVCFFVGERSVEEYLLPYIEQSLKDTAEAVIVNGLDCLAILCKRGFLRKRILLEMIEHAFPLLCYPSQWVRRSAATFIA 800
WD40-rpts
Query 801 ASSERLGAVDSYVFLAPVIRPFLRRQPTSLASEKALLCCLKPPISREVYYEILEKARSSDMLERQRKIWYSSSPQSVNWD 880
WD40-rpts
Query 881 SIDFLKKGMGELNLMKNWPSKPQSSNGQNPADSLFCPPELIDGDEKLRGIKTPVSNVSSKVDISDPVFSEKLQLSGFISP 960
WD40-rpts
Query 961 QVSGISSFVLDKTSDGIPLYSFSLDKRDTGFHSVASDSPLELNSLEFDSSSIPWMDPVNKSFNLASSAPAPKLGAGSLCI 1040
WD40-rpts
Query 1041 GSGSKQFYRVVHEPDGRESDQTSYISSKFQEMGSSSTLKGNSSMTEDAPSTNDLTTSPSFTRASAIPDSGWKPRGVLVAH 1120
WD40-rpts
Query 1121 LQEHHSAVNDIAVSTDHSFFVSASEDSTVKVWDSRKLEKDISFRSRLTYHLEGSRALCATMLRGSAQVVVGSCDGLIHMF 1200
WD40-rpts (______________WD 1_____________)(_____________________WD 2_____________________
Query 1201 SVDYFSKGLGNAAEKYSGLADIKKKDINEGAIITMLNYSTDSSQMVMYSTQNCGIHLWDTRTNVNVFTLKSTPEEGYVSS 1280
WD40-rpts ) (___________________W
Query 1281 LLAGPCGNWFVSGSSRGVLTLWDLRFLVPVNSWKYSVLCPIERMCLFVHPPNTSVATAARPLIYVSAGCNEVSLWNAENW 1360
WD40-rpts D 3___________________)
Query 1361 SCHQILRVASYDNETEMSDLPWALTRPSTKGNPIQDLRRNVNPKYKVDELNEPPPRLPGIRSLLPLPGGDLLTGGTDLRI 1440
WD40-rpts
Query 1441 RRWNHYSPDRTYCVCGPNVKGIGNEDFYETRSSFGVQVVQETRRRPLSTKLTTKAILAAAATDSAGCHRDSILSLASVKL 1520
WD40-rpts (_______________________WD 4_____
Query 1521 NQRLLLSGSRDGAIKVWK 1538
WD40-rpts _________________)
 4 WD40-repeats found in QUERY=CsaV3_1G039890 (Len=1538): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 16 1121-1153 6.50 383.34 0.00042 40.0% 38.03 WD 2: Seg 19 1154-1201 3.28 250.16 0.02617 20.0% 42.68 WD 3: Seg 26 1260-1303 5.09 324.87 0.00260 30.0% 48.55 WD 4: Seg 39 1488-1538 3.77 270.20 0.01414 35.0% 28.07Multiple sequence alignment of 4 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 1121-1153 ------------------LQ----EHH--------SAVNDI-AVSTDHSFFVSASEDSTVKVWD WD 2 1154-1201 SRKLEK-----------DIS----FRSRLTYHLEGSRALCA-TMLRGSAQVVVGSCDGLIHMFS WD 3 1260-1303 TRTNVN-----------VFTLKSTPEE--------GYVSSL-LAGPCGNWFVSGSSRGVLTLWD WD 4 1488-1538 -STKLTTKAILAAAATDSAG----CHR--------DSILSLASVKLNQRLLLSGSRDGAIKVWK WD40 Template TGECLR-----------TLS----GHT--------SGVTSV-SFSPDGKRLVSGSEDGTIKVWD |
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