JobID: UOQSU1659500063 - WDRR: WD40 Repeat Recognition

Input parameters:

  Query = CmaCh11G017950 (Len=525)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CmaCh11G017950, Len=525):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MICVRELIKLYISWLRYLVAPTDYRDLFVLILRFESLHLVKVISRSTDEFTRERSQDLQRVFRNFDPNLRTQEKAVEYVR 80  
WD40-rpts      (___________________WD 1___________________)   (__________________WD 2__________

Query       81 AINAAKLDRMFAKPFIGAMDGHLDAVSCMAKNPNHLKGIFSGSMDGDIRLWDIANRRTVCQFPGHQGAVRGLTSSSDGRI 160 
WD40-rpts      ________)   (_________________WD 3_________________)   (_________________WD 4___

Query      161 LISCGTDCTVRLWNIPIPTLNSYETSNNSSEPLAVYVWKNAFWAVDHQWDGNLFATAGAQLNIWDHNRSQPVSSFEWGTD 240 
WD40-rpts      _____________)              (________________WD 5_______________)   (___________

Query      241 SVISVRFNPGEPNVLATSASDRSITLYDLRMSSPVRKIIMQTKTNSICWNPREPMNFTAANEDCNCYSYDSRRLDEAKCV 320 
WD40-rpts      ______WD 6_________________)   (_________________WD 7________________)    (_____

Query      321 HRDHVSAVMDIDFSPSGREFVTGSYDRTIRIFPYNGGHSREIYHTKRMQRVFCVRFSCDASYVISGSDDTNLRLWKAKAS 400 
WD40-rpts      ____________WD 8________________)   (_________________WD 9_________________)   (

Query      401 EQLGVLLPREKRKHEYQEAVKNRYKHLPEVKRIVRHRHLPKPIFKAAALRHTIVDAERKKAERRKAHSAPGSISTVPLRR 480 
WD40-rpts      _________________WD10________________)                                          

Query      481 RRIIKEKLVSLEGLIGKFLNIMIQASVVLKNFPTPCPHPMLSTDS 525 
WD40-rpts

10 WD40-repeats found in QUERY=CmaCh11G017950 (Len=525):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-44       5.18  328.47  0.00233       10.0%     38.68
  WD 2:  Seg  5    48-89       3.12  243.74  0.03185       17.5%     33.74
  WD 3:  Seg  9    93-132      8.36  460.11  3.9e-05       32.5%     54.92
  WD 4:  Seg 13   136-174      9.31  499.18  1.2e-05       27.5%     58.61
  WD 5:  Seg 17   189-225      4.70  308.69  0.00430       12.5%     46.73
  WD 6:  Seg 21   229-268      7.70  432.83  9.1e-05       25.0%     56.51
  WD 7:  Seg 25   272-310      5.51  342.35  0.00151       17.5%     54.60
  WD 8:  Seg 29   315-353      9.06  488.87  1.6e-05       35.0%     53.00
  WD 9:  Seg 33   357-396      7.69  432.32  9.3e-05       27.5%     58.71
  WD10:  Seg 37   400-438      6.25  372.87  0.00059        7.5%     35.03

Multiple sequence alignment of 10 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-44     ---MICVRELIKLYISWLRYLVAPT-DY-RDLFVLILRF----ESLHLVKVIS
   WD 2   48-89     DEFTRER----SQDLQRV-FRNFDP-NL-R----TQEKAVEYVRAINAAKLDR
   WD 3   93-132    KPFIGAM----DGHLDAVSCMAKNP-NHLK----GIFSG----SMDGDIRLWD
   WD 4  136-174    RRTVCQF----PGHQGAVRGLTSSS-DG-R----ILISC----GTDCTVRLWN
   WD 5  189-225    SSEPLAV----YVWKNAFWAVDHQW-DG-N----LFATA----GAQ--LNIWD
   WD 6  229-268    SQPVSSF----EWGTDSVISVRFNPGEP-N----VLATS----ASDRSITLYD
   WD 7  272-310    SSPVRKI----IMQTK-TNSICWNP-RE-P---MNFTAA----NEDCNCYSYD
   WD 8  315-353    DEAKCVH----RDHVSAVMDIDFSP-SG-R----EFVTG----SYDRTIRIFP
   WD 9  357-396    GHSREIY---HTKRMQRVFCVRFSC-DA-S----YVISG----SDDTNLRLWK
   WD10  400-438    SEQLGVL----LPREKRKHEYQEAV-KN-R----YKHLP----EVKRIVRHRH

   WD40 Template    GECLRTL----SGHTSGVTSVSFSP-DG-K----RLVSG----SEDGTIKVWD