WDRR: WD40 Repeat Recognition
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| JobID: UNAOP1659462177 Submitted: 2022-08-03 01:42:57 You can bookmark this page for further accessing the result in the future. Results on this server will be retained for 30 days. Job status: [Done] Total run time: 79787899 seconds. [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = CmaCh07G009830 (Len=929) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (CmaCh07G009830, Len=929): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 AAKMERKKTMTMNWDGLCDDDEDDRFFESMERMSCAMPEDLASSSDDDDFEDSRMSFASVVSTAKHEEFRAFAMTSQMTP 80
WD40-rpts
Query 81 EYDIWMATPGSIKERRKRLLEGMGLNSGKQFQRIQSKALQREISRKLLANVEISQPETTTVVSPENVDQKQEPPETPLPI 160
WD40-rpts
Query 161 VLVRSRSHGERGTFTISRERNDDLIKNVPRQSLRRTYSTIMASSARIRNYPDAITVSSNECGQSSGAVFVIKNLDTGKEF 240
WD40-rpts (_________________WD 1________________) (__________________WD 2___
Query 241 IVNEYDQDGMWNRLSDLQTGKQLTMEEFEKCVGYSPVVKELMRRENVSRMNGQFGDRKINMNSYLSKSLRMSKRRGAALL 320
WD40-rpts _______________) (_______________WD 3_______________)
Query 321 KNIKGSMTGLIGEKDREIPQASLETRPSRNASSSCHSPPRNSTSTPPSSDQWVKVRQSGRSYKELSALHFCQEIEAHEGS 400
WD40-rpts (________________________WD 4________________________)(______________________
Query 401 IWVMKFSSDARLLASAGEDRVIHIWEVQECEVMSMKPNEEGSMTPLHPLYCPSPERPAIGEASALPSEKRKKGKGLSGSR 480
WD40-rpts WD 5_____________________) (___________________WD 6__________________)
Query 481 KGTVIPDYVHVPETVFSLSDKPLSSFTGHQDDVLDLSWSSNSQLLLSSSMDKTVRLWDMETKNCLKMFAHNDYVTCVQFN 560
WD40-rpts (_________________WD 7________________) (_________________WD
Query 561 PVDDNYFISGALDAKVRIWNIPDRYVVDWTDLHEMVTAACYTPDGQGAIIGSHKGSCRKYSIEDSKLEQKNQVDFLSKKK 640
WD40-rpts 8_________________) (________________WD 9________________) (__________
Query 641 STGKKITGFQFVPGSPTEVLVTSADSRIRILEGTEVTHKFKGFRNTSSQLTASFNQDGKYVICASEDSQVFVWKREEPRN 720
WD40-rpts _________WD10__________________) (_________________WD11________________) (__
Query 721 PRNPNSGKKGLIATRGHEHFPCRDVSVAIAWPGMISGKPPLVQMYSKRHSKRGQSQPPSACSSPTREENGSFVNPKKLLP 800
WD40-rpts ________________WD12__________________)(________________WD13_______________) (
Query 801 PLPKKYNNNTSPPPDEEQQQQQQRQQAQVARSESRTGEALSPSPSASIRYGDSPSISSSAGINNNPSASPWPSSWSWFDV 880
WD40-rpts _________________WD14________________) (
Query 881 GSSHGHHAVPATAWGLVIVTAGLGGEIRVYQNFGLPRRIGRQTNFWQTT 929
WD40-rpts _____________WD15_____________)
 15 WD40-repeats found in QUERY=CmaCh07G009830 (Len=929): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 3 172-210 5.23 330.57 0.00218 5.0% 31.58 WD 2: Seg 6 215-256 4.51 300.89 0.00547 10.0% 34.42 WD 3: Seg 10 268-303 6.43 380.47 0.00046 12.5% 28.10 WD 4: Seg 16 324-377 6.27 373.51 0.00058 17.5% 42.02 WD 5: Seg 20 378-426 8.77 476.74 2.3e-05 27.5% 53.29 WD 6: Seg 24 430-472 5.10 325.22 0.00258 15.0% 28.25 WD 7: Seg 29 500-538 9.75 517.42 6.6e-06 32.5% 52.73 WD 8: Seg 33 541-580 7.47 423.34 0.00012 27.5% 53.15 WD 9: Seg 37 584-621 7.02 404.65 0.00022 22.5% 55.13 WD10: Seg 42 630-672 6.73 392.55 0.00032 17.5% 53.43 WD11: Seg 46 676-714 8.63 471.10 2.8e-05 30.0% 57.98 WD12: Seg 50 718-759 4.15 286.12 0.00865 12.5% 27.26 WD13: Seg 53 760-796 5.99 362.06 0.00082 12.5% 18.70 WD14: Seg 55 800-838 5.26 332.12 0.00208 7.5% -1.19 WD15: Seg 57 880-911 5.22 330.43 0.00219 20.0% 35.04Multiple sequence alignment of 15 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 172-210 -G---------TFTI--------------SRERNDDLIKNV----PRQS-L---RR-TYS---TIMASSARIRNY WD 2 215-256 -T---------VSSN--------------ECGQSSGAVFVI----KNLD-T---GK-EFIVNEYDQDGMWNRLSD WD 3 268-303 -------------FE--------------KCVGYSPVVKEL----MRRE-N---VS-RMN---GQFGDRKINMNS WD 4 324-377 KG---------SMTGLIGEKDREIPQASLETRPSRNASSSC----HSPP-R---NS-TST---PPSSDQWVKVRQ WD 5 378-426 SGRSYKELSALHFCQ--------------EIEAHEGSIWVM----KFSS-D---AR-LLA---SAGEDRVIHIWE WD 6 430-472 -C---------EVMS--------------MKPNEEGSMTPLHPLYCPSP-E---RP-AIG---EASALPSEKRKK WD 7 500-538 -D---------KPLS--------------SFTGHQDDVLDL----SWSS-N---SQ-LLL---SSSMDKTVRLWD WD 8 541-580 -T---------KNCL--------------KMFAHNDYVTCV----QFNPVD---DN-YFI---SGALDAKVRIWN WD 9 584-621 -R---------YVVD--------------WTDLHEM-VTAA----CYTP-D---GQ-GAI---IGSHKGSCRKYS WD10 630-672 KN-------QVDFLS--------------KKKSTGKKITGF----QFVP-G---SPTEVL---VTSADSRIRILE WD11 676-714 -V---------THKF--------------KGFRNTSSQLTA----SFNQ-D---GK-YVI---CASEDSQVFVWK WD12 718-759 -P---------RNPR--------------NPNSGKKGLIAT----RGHE-HFPCRD-VSV---AIAWPGMISGKP WD13 760-796 ------------PLV--------------QMYSKRHSKRGQ----SQPP-S---AC-SSP---TREENGSFVNPK WD14 800-838 -P---------PLPK--------------KYNNNTSPPPDE----EQQQ-Q---QQ-RQQ---AQVARSESRTGE WD15 880-911 VG-------------------------------SSHGHHAV----PATA-W---GL-VIV---TAGLGGEIRVYQ WD40 Template TG---------ECLR--------------TLSGHTSGVTSV----SFSP-D---GK-RLV---SGSEDGTIKVWD |
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