Input parameters:

  Query = CsaV3_7G001000 (Len=393)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CsaV3_7G001000, Len=393):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAGEEDGVDEVVEEFSIWKKNSPYLYDLLISHSLEWPSLTVDWVPSAPFPHQANPSLAVHKLVLGTHTSEDVPNFLMVAD 80  
WD40-rpts                            (_________________WD 1________________)     (_____________

Query       81 AVFPVKASETRIDISEEDPILPKIEITQKIRVEGEVNRARCMPQNPEIVGAKTSGCEVYVFNRAKQGEKDQGVVCDPDLR 160 
WD40-rpts      ___WD 2_______________)(_________________WD 3________________)            (_____

Query      161 LRGHDKEGYGLSWSPFKEGYLLSGSNDQKICLWDVSSMADKNVLDAMHVYEAHESVVGDVSWHLKNENLFGSVGDDCLLV 240 
WD40-rpts      ____________WD 4_________________)            (________________WD 5_____________

Query      241 IWDLRTNKSVDSVRAHEEEVNYVSFNPYNEWILATASSDTTVGLFDLRKLAEPLHALSSHTEGVFQVEWDPNHETVLASS 320 
WD40-rpts      __)   (_________________WD 6_________________)    (_________________WD 7________

Query      321 GDDRRLMVWDLNNIGNEQDGDAEDGPPELLFSHGGHKAKISDFSWNSNEPWVISSVAEDNSVQVWQMAKSIYR 393 
WD40-rpts      _________)                (_________________WD 8_________________)       

8 WD40-repeats found in QUERY=CsaV3_7G001000 (Len=393):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    23-61       3.83  272.76  0.01306       10.0%     14.65
  WD 2:  Seg  5    67-103      3.47  258.00  0.02057        5.0%     -9.13
  WD 3:  Seg  6   104-142      4.44  298.22  0.00595        7.5%     54.32
  WD 4:  Seg 10   155-194      6.61  387.76  0.00037       35.0%     52.71
  WD 5:  Seg 14   207-243      6.51  383.74  0.00042       25.0%     46.76
  WD 6:  Seg 17   247-286      7.52  425.19  0.00012       27.5%     56.12
  WD 7:  Seg 21   291-330      8.21  453.93  4.7e-05       40.0%     50.29
  WD 8:  Seg 25   347-386      6.04  364.25  0.00077       25.0%     55.73

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   23-61     PYLYDLLISHSLEWPSLTVDWVP-S-A-P-FPHQANPSLAVHK
   WD 2   67-103    --HTSEDVPNFLMVADAVFPVKA-S-E-T-RIDISEEDPILPK
   WD 3  104-142    -IEITQKIRVEGEVNRARCMPQNPE-I-V-GAKTSGCEVYVFN
   WD 4  155-194    CDPDLRLRGHDKEGYGLSWSPFK-EGY-L-LSGSNDQKICLWD
   WD 5  207-243    ---MHVYEAHESVVGDVSWHLKN-E-N-LFGSVGDDCLLVIWD
   WD 6  247-286    NKSVDSVRAHEEEVNYVSFNPYN-EWI-L-ATASSDTTVGLFD
   WD 7  291-330    AEPLHALSSHTEGVFQVEWDPNH-E-TVL-ASSGDDRRLMVWD
   WD 8  347-386    PELLFSHGGHKAKISDFSWNSNE-PWV-I-SSVAEDNSVQVWQ

   WD40 Template    GECLRTLSGHTSGVTSVSFSPDG-K-R-L-VSGSEDGTIKVWD