Input parameters:

  Query = CsaV3_7G035380 (Len=301)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CsaV3_7G035380, Len=301):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MPALKIDSGHQDTVHDVSMDYYGKRLATVSSDQTIKIIGVSNSASQHLATLTGHQGPVWQAAWAHPKFGSLLASCSYDGR 80  
WD40-rpts      (_________________WD 1________________)     (__________________WD 2_____________

Query       81 VIIWKEGNQNEWTQAHVFDDHKSSVNSIAWAPHELGLCLACGSSDGNISVFTARQDGGWDTSRIDQAHPLGVTSVSWAPS 160 
WD40-rpts      ____)(_____________________WD 3____________________)      (_____________________

Query      161 SAPGALVGSGLVDPVLKLCSGGCDNTVKVWKPYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASQDGKVIIW 240 
WD40-rpts      ___WD 4_______________________)       (___________________WD 5__________________

Query      241 TVAREGDQWEGKILSDFKTAVWRVSWSLTGNILAVADGNNSVTLWKESVDGDWQQVTTVEP 301 
WD40-rpts      )(____________________WD 6___________________)               

6 WD40-repeats found in QUERY=CsaV3_7G035380 (Len=301):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-39       9.48  506.43  9.3e-06       40.0%     48.09
  WD 2:  Seg  4    45-85       7.91  441.42  7.0e-05       32.5%     55.92
  WD 3:  Seg  8    86-132      7.94  442.70  6.7e-05       35.0%     57.85
  WD 4:  Seg 12   139-191      7.43  421.44  0.00013       42.5%     46.68
  WD 5:  Seg 16   199-241      7.86  439.36  7.5e-05       30.0%     53.90
  WD 6:  Seg 20   242-286      8.20  453.18  4.9e-05       22.5%     54.06

Multiple sequence alignment of 6 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-39     -M-----P-----ALKIDSGHQDTVHDVSMDY--Y----G--------------KRLATVSSDQTIKIIG
   WD 2   45-85     -S-----Q-----HLATLTGHQGPVWQAAWAHPKF----G--------------SLLASCSYDGRVIIWK
   WD 3   86-132    EGNQNEWT-----QAHVFDDHKSSVNSIAWAP--H--ELG--------------LCLACGSSDGNISVFT
   WD 4  139-191    -W-----D-----TSRIDQAHPLGVTSVSWAP--S----SAPGALVGSGLVDPVLKLCSGGCDNTVKVWK
   WD 5  199-241    -M-----D-----CFPALQMHTDWVRDVAWAP--NLGLPK--------------STIASASQDGKVIIWT
   WD 6  242-286    VA-----REGDQWEGKILSDFKTAVWRVSWSL--T----G--------------NILAVADGNNSVTLWK

   WD40 Template    TG-----E-----CLRTLSGHTSGVTSVSFSP--D----G--------------KRLVSGSEDGTIKVWD