Input parameters:

  Query = CsaV3_4G008980 (Len=333)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CsaV3_4G008980, Len=333):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MEHAASRSEFLATYESPHPLYAMAISSPHAHSLNFSSRIALGSFVEEYNNRVDIVSFDPDSISIKANPSLSFEHPYPPTK 80  
WD40-rpts                                                                     (________________

Query       81 LMFNPSPLSSLLASSGDSLRLWKLGDSSIEPLSLLNNSKTSEFCAPLTSFDWNEVEPKRIGTSSIDTTCTIWDIEKSVVE 160 
WD40-rpts      _WD 1_________________)           (_________________WD 2________________)   (___

Query      161 TQFIAHDKEVYDIAWGEARVFASVSADGSVRIFDMRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKIVIL 240 
WD40-rpts      _____________WD 3________________)      (__________________WD 4_________________

Query      241 DIRSPSVPVAELERHHSSVNAIAWAPRSCRHICSAGDDKQALIWELPMVAGPNGIDPMSMYSAAFEINQLQWSAAQPDWI 320 
WD40-rpts      )    (_________________WD 5_________________)        (_________________WD 6_____

Query      321 ALAFSNKMQLLKV 333 
WD40-rpts      ___________) 

6 WD40-repeats found in QUERY=CsaV3_4G008980 (Len=333):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  5    64-103      8.32  458.42  4.1e-05       15.0%     42.24
  WD 2:  Seg 10   115-153      6.80  395.56  0.00029       25.0%     43.39
  WD 3:  Seg 13   157-194      6.94  401.47  0.00024       17.5%     55.93
  WD 4:  Seg 17   201-241      4.59  304.44  0.00490       10.0%     53.09
  WD 5:  Seg 21   246-285      7.61  428.85  0.00010       20.0%     50.97
  WD 6:  Seg 25   294-332      5.40  337.61  0.00175        5.0%     43.20

Multiple sequence alignment of 6 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   64-103    IKANPSLSFEHPYPPTKLMFNP-SP-LSSLLASSG-DSLRLWK
   WD 2  115-153    LNN--SKTSEFCAPLTSFDWNEVEP-KRIGTSSID-TTCTIWD
   WD 3  157-194    -SVVETQFIAHDKEVYDIAWG--EA-RVFASVSAD-GSVRIFD
   WD 4  201-241    -STIIYESPQPDTPLLRLAWNKQDL-RYMATILMDSNKIVILD
   WD 5  246-285    -SVPVAELERHHSSVNAIAWAP-RSCRHICSAGDD-KQALIWE
   WD 6  294-332    -GIDPMSMYSAAFEINQLQWSA-AQ-PDWIALAFS-NKMQLLK

   WD40 Template    TGECLRTLSGHTSGVTSVSFSP-DG-KRLVSGSED-GTIKVWD