WDRR: WD40 Repeat Recognition
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| JobID: UE4PH1528869170 Submitted: 2018-06-13 13:52:50 You can bookmark this page for further accessing the result in the future. Results on this server will be retained for 30 days. Job status: [Done] Total run time: 210382859 seconds. [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = vps13 (Len=3144) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (vps13, Len=3144): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MLESLAANLLNRLLGSYVENFDPNQLNVGIWSGDVKLKNLKLRKDCLDSLNLPIDVKSGILGDLVLTVPWSSLKNKPVKI 80
WD40-rpts
Query 81 IIEDCYLLCSPRSEDHENDEEMIKRAFRLKMRKVSEWELTNQARILSTQSENKTSSSSSEKNNAGFMQSLTTKIIDNLQV 160
WD40-rpts
Query 161 TIKNIHLRYEDMDGIFTTGPSSVGLTLNELSAVSTDSNWAPSFIDITQNITHKLLTLNSLCLYWNTDSPPLISDDDQDRS 240
WD40-rpts
Query 241 LENFVRGFKDMIASKNSTAPKHQYILKPVSGLGKLSINKLGSTEEQPHIDLQMFYDEFGLELDDTEYNDILHVLSSIQLR 320
WD40-rpts
Query 321 QITKKFKKARPSFAVSENPTEWFKYIAACVINEIHEKNKMWTWESMKEKCEQRRLYTKLWVEKLKLKNLEAPLRDPIQEA 400
WD40-rpts
Query 401 QLSELHKDLTYDEIILFRSVAKRQYAQYKLGMSEDSPTPTASSNIEPQTSNKSATKNNGSWLSSWWNGKPTEEVDEDLIM 480
WD40-rpts
Query 481 TEEQRQELYDAIEFDENEDKGPVLQVPRERVELRVTSLLKKGSFTIRKKKQNLNLGSIIFENCKVDFAQRPDSFLSSFQL 560
WD40-rpts
Query 561 NKFSLEDGSPNALYKHIISVRNLSKDQSSIDNHATGEEEEEDEPLLRASFELNPLDGLADSNLNIKLLGMTVFYHVHFIT 640
WD40-rpts
Query 641 EVHKFFKASNQHMETIGNIVNAAEATVEGWTTQTRMGIESLLEDHKTVNVSLDLQAPLIILPLDPHDWDTPCAIVDAGHM 720
WD40-rpts
Query 721 SILSDLVPKEKIKEIKELSPEEYDKIDGNEINRLMFDRFQILSQDTQIFVGPDIQSTIGKINTASSTNDFRILDKMKLEL 800
WD40-rpts
Query 801 TVDLSILPKAYKLPTIRVFGHLPRLSLSINDIQYKTIMNLIANSIPSMIDDEENNGDYVNYSSGSEKEMKKQIQLQLKNT 880
WD40-rpts
Query 881 LKALENMQPLQIEQKFLELHFDIDQAKIAFFQCIKNDSRNSEKLIDILCQRLNFNFDKRAKEMNLDLRVHSLDVEDYIEL 960
WD40-rpts
Query 961 TDNKEFKNLISSGVEKVTRSQKDLFTLKYKRVQRIVSHNDTLIELFDQDIVMHMSELQLVLTPRSVLTLMNYAMLTFTDP 1040
WD40-rpts
Query 1041 NAPEMPADVLRHNKEDRDDAPQKINMKIKMEAVNVIFNDDSIKLATLVLSAGEFTMVLLPERYNINLKLGGLELTDETNE 1120
WD40-rpts
Query 1121 SFSRDSVFRKIIQMKGQELVELSYESFDPATNTKDYDSFLKYSTGSMHVNFIESAVNRMVNFFAKFQKSKVSFDRARLAA 1200
WD40-rpts
Query 1201 YNQAPSIDAVNNMKMDIVIKAPIIQFPKLVGTQENNYDTMRFYLGEFFIENKFSVIDESHKINHIKLGVREGQLSSNLNF 1280
WD40-rpts
Query 1281 DGSSQQLYLVENIGLLFNIDRDPLPQDDTPELKVTSNFESFALDLTENQLTYLLEISNKVSSAFNITDENSGELGGKGEI 1360
WD40-rpts
Query 1361 KSPSPDPASLSSESERTATPQSLQGSNKSNIKNPEQKYLDFSFKAPKIALTLYNKTKGVTSLNDCGLTRIMFQDIGCSLG 1440
WD40-rpts
Query 1441 LKNDGTVDGQAHVAAFRIEDIRNIKDNKHTELIPKSKNKEYQFVANISRKNLEVGRLLNISMTMDSPKMILAMDYLVSLK 1520
WD40-rpts
Query 1521 EFFDAIMSKSHENNLYYPENTNQKPENKAIVESVQEGGDVTKIQYSVNIIETALILLADPCDMNSEAISFKIGQFLVTDQ 1600
WD40-rpts
Query 1601 NIMTVAANNVGIFLFKMNSSEEKLRLLDDFSSSLTIDKRNSTPQTLMTNIQLSVQPLLMRISLRDIRLAMLIFKRVTTLL 1680
WD40-rpts
Query 1681 NKMTEKEDNGEEEESTDKIQFSHEFERKLAVLDPSILGERSRASQSSDSESIEVPTAILKNETFNADLGGLRFILIGDVH 1760
WD40-rpts
Query 1761 EMPILDMNVNEITASAKDWSTDFEALASLETYVNIFNYSRSSWEPLLEMIPITFHLSKGHSEMDPAFSFDILTQRIAEIT 1840
WD40-rpts
Query 1841 LSARSIAMLSHIPASLTEELPLASRVSQKPYQLVNDTELDFDVWIQDKTTEDNKNEVVLLKANTSLPWEFEDWRSIREKL 1920
WD40-rpts
Query 1921 DIDKSKNILGVCVSGQNYKTIMNIDATTEGENLHVLSPPRNNVHNRIVCEARCDENNVKIITFRSTLVIENTTSTEIELL 2000
WD40-rpts
Query 2001 VDSKDPNKPSLKYAIKPHQSKSVPVEYAYDSDIRIRPASEDIYDWSQQTLSWKSLLSNQMSIFCSSKEDSNQRFHFEIGA 2080
WD40-rpts
Query 2081 KYDEREPLAKIFPHMKIVVSASMTIENLLPADINFSIFDKREEKRTDFLKTGESMEVHHISLDSFLLMSVQPLQDEASAS 2160
WD40-rpts
Query 2161 KPSIVNTPHKSPLNPEDSLSLTLSGGQNLLLKLDYKNIDGTRSKVIRIYSPYIIMNSTDRELYIQSSLLNIAQSKILLEN 2240
WD40-rpts
Query 2241 EKRYTIPKMFSFDKEDDKSNRARIRFKESEWSSKLSFDAIGQSFDASVSIKNKEQESNLGINISEGKGKYLLSKVIEIAP 2320
WD40-rpts
Query 2321 RYIISNTLDIPIEVCETGSMDVQQIESNITKPLYRMRNIVDKQLVLKFLGGDSNWSQPFFIKNVGVTYLKVLKNSRHKLL 2400
WD40-rpts
Query 2401 KIEILLDKATIFIRIKDGGDRWPFSIRNFSDHDFIFYQRDPRKVSDPYKDDQSNESSSRSFKPIFYRIPSKSIMPYAWDF 2480
WD40-rpts
Query 2481 PTAKEKYLVLESGTRTREVRLAEIGELPPLRLDKRSKDKPAPIVGLHVVADDDMQALVIVNYKANVGLYKLKTASATTTS 2560
WD40-rpts
Query 2561 SVSVNSSVTDGFVQKDEDEKVNTQIVVSFKGVGISLINGRLQELLYINMRGIELRYNESKAYQTFSWKMKWMQIDNQLFS 2640
WD40-rpts
Query 2641 GNYSNILYPTEIPYTEKEIENHPVISGSISKVNDSLQAVPYFKHVTLLIQEFSIQLDEDMLYAMMDFIKFPGSPWIMDSR 2720
WD40-rpts
Query 2721 DYKYDEEIQLPDVSELKTAGDIYFEIFHIQPTVLHLSFIRSDEISPGLAEETEESFSSSLYYVHMFAMTLGNINEAPVKV 2800
WD40-rpts
Query 2801 NSLFMDNVRVPLPILMDHIERHYTTQFVYQIHKILGSADCFGNPVGLFNTISSGVWDLFYEPYQGYMMNDRPQEIGIHLA 2880
WD40-rpts
Query 2881 KGGLSFAKKTVFGLSDSMSKFTGSMAKGLSVTQDLEFQRVRRLQQRINKNNRNALANSAQSFASTLGSGLSGIALDPYKA 2960
WD40-rpts
Query 2961 MQKEGAAGFLKGLGKGIVGLPTKTAIGFLDLTSNLSQGVKSTTTVLDMQKGCRVRLPRYVDHDQIIKPYDLREAQGQYWL 3040
WD40-rpts
Query 3041 KTVNGGVFMNDEYLSHVILPGKELAVIVSMQHIAEVQMATQELMWSTGYPSIQGITLERSGLQIKLKSQSEYFIPISDPE 3120
WD40-rpts
Query 3121 ERRSLYRNIAIAVREYNKYCEAIL 3144
WD40-rpts
 No WD40-repeats found in QUERY=vps13 (Len=3144)! |
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