Input parameters:

  Query = CmaCh18G009730 (Len=552)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CmaCh18G009730, Len=552):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MNAPIIDPLQGDFPEVIEEFLEHGVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELKDKDCVSAITSVCWSKYGH 80  
WD40-rpts                 (_________________WD 1_________________)   (__________________WD 2___

Query       81 QILVSAADRSLTLWDVLKGEKINRITLQQTPLQARLHPGSSSPSLCLACPLSSAPMIVDLKTGDTILLPVCISDTDTASS 160 
WD40-rpts      ______________)   (__________________WD 3_________________)                   (_

Query      161 RGKVLDGTQPFTPTAACFNKYGDLVYVGNSKGEILVIDYERVRIEAMVPISGGAVVKNIVFSRNGQYLLTNSNDRTIRIY 240 
WD40-rpts      ________________WD 4_________________)(___________________WD 5__________________

Query      241 ENLLPNKDGLKFIDEIMKELDELDGAEKLKAVGTKCLTLFREFQDSITRMHWKAPCFSGDGEWVVGGSASKGEHKIYIWD 320 
WD40-rpts      )(_________________WD 6_________________)(_________________WD 7________________)

Query      321 RAGYLVKILEGPKEALIDLSWHPVHPIVVSVSLTGLIYIWAKDYTENWSAFAPDFKELEENEEYVEREDEFDLNPETEKV 400 
WD40-rpts        (_________________WD 8________________)                                       

Query      401 KELDVNEDEEVDIVNVEKDSAFSDSDASQDELCFLPAIPCPDIVEQHDKCVEISSKMIDDDNSGSPLSEEAAVNGRTTNH 480 
WD40-rpts                                                                                      

Query      481 ASSPLEVLDNPDDAGGTRAKRRRKPSEKGLELQAEKVKKPSKPSSRLSKFKTKSIGHQDHGNGRYADDNSDE 552 
WD40-rpts                                                                              

8 WD40-repeats found in QUERY=CmaCh18G009730 (Len=552):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    12-51       7.41  420.71  0.00013       20.0%     54.28
  WD 2:  Seg  5    55-95       7.95  443.26  6.6e-05       25.0%     57.66
  WD 3:  Seg  9    99-139      6.51  383.77  0.00042       10.0%     52.60
  WD 4:  Seg 14   159-198      5.96  361.01  0.00085       25.0%     48.05
  WD 5:  Seg 17   199-241      7.74  434.28  8.7e-05       22.5%     58.94
  WD 6:  Seg 21   242-281      7.40  420.21  0.00014        5.0%     31.56
  WD 7:  Seg 24   282-320      5.60  345.89  0.00136       27.5%     33.79
  WD 8:  Seg 27   323-361      9.14  492.09  1.4e-05       27.5%     58.18

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   12-51     DFP---EVIEEFLE--HG-VMKC--IAFNRRGTLLAAGCS---DGSCVIWD
   WD 2   55-95     -RG---IAKELKDKDCVS-AITS--VCWSKYGHQILVSAA---DRSLTLWD
   WD 3   99-139    -GE---KINRITLQ--QT-PLQARLHPGSSSPSLCLACPL---SSAPMIVD
   WD 4  159-198    -SS---RGKVLDGT--QPFTPTA--ACFNKYGDLVYVGNS---KGEILVID
   WD 5  199-241    YERVRIEAMVPISG--GA-VVKN--IVFSRNGQYLLTNSN---DRTIRIYE
   WD 6  242-281    NLL---PNKDGLKF--ID-EIMK--ELDELDGAEKLKAVG---TKCLTLFR
   WD 7  282-320    -------EFQDSIT--RM-HWKA--PCFSGDGEWVVGGSASKGEHKIYIWD
   WD 8  323-361    -GY---LVKILEGP--KE-ALID--LSWHPVHPIVVSVSL---TGLIYIWA

   WD40 Template    TGE---CLRTLSGH--TS-GVTS--VSFSPDGKRLVSGSE---DGTIKVWD