WDRR: WD40 Repeat Recognition
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| JobID: U7WQB1488183932 Submitted: 2017-02-27 16:25:32 You can bookmark this page for further accessing the result in the future. Results on this server will be retained for 30 days. Job status: [Done] Total run time: 251067619 seconds. [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = WDR62 (Len=1523) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (WDR62, Len=1523): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MAAVGSGGYARNDAGEKLPSVMAGVPARRGQSSPPPAPPICLRRRTRLSTASEETVQNRVSLEKVLGITAQNSSGLTCDP 80
WD40-rpts (________________WD 1________________)
Query 81 GTGHVAYLAGCVVVILDPKENKQQHIFNTARKSLSALAFSPDGKYIVTGENGHRPAVRIWDVEEKNQVAEMLGHKYGVAC 160
WD40-rpts (__________________WD 2_________________) (_______________
Query 161 VAFSPNMKHIVSMGYQHDMVLNVWDWKKDIVVASNKVSCRVIALSFSEDSSYFVTVGNRHVRFWFLEVSTETKVTSTVPL 240
WD40-rpts ___WD 3_________________) (________________WD 4________________) (____
Query 241 VGRSGILGELHNNIFCGVACGRGRMAGSTFCVSYSGLLCQFNEKRVLEKWINLKVSLSSCLCVSQELIFCGCTDGIVRIF 320
WD40-rpts ________________WD 5___________________) (_________________WD 6_________________
Query 321 QAHSLHYLANLPKPHYLGVDVAQGLEPSFLFHRKAEAVYPDTVALTFDPIHQWLSCVYKDHSIYIWDVKDINRVGKVWSE 400
WD40-rpts ) (____________________WD 7____________________)(____________
Query 401 LFHSSYVWNVEVYPEFEDQRACLPSGSFLTCSSDNTIRFWNLDSSPDSHWQKNIFSNTLLKVVYVENDIQHLQDMSHFPD 480
WD40-rpts ____________WD 8________________________)
Query 481 RGSENGTPMDVKAGVRVMQVSPDGQHLASGDRSGNLRIHELHFMDELVKVEAHDAEVLCLEYSKPETGLTLLASASRDRL 560
WD40-rpts (_________________WD 9________________) (__________________WD10______________
Query 561 IHVLNVEKNYNLEQTLDDHSSSITAIKFAGNRDIQMISCGADKSIYFRSAQQGSDGLHFVRTHHVAEKTTLYDMDIDITQ 640
WD40-rpts ____) (_________________WD11________________)(_____________________WD12_____
Query 641 KYVAVACQDRNVRVYNTVNGKQKKCYKGSQGDEGSLLKVHVDPSGTFLATSCSDKSISVIDFYSGECIAKMFGHSEIITS 720
WD40-rpts _______________) (_________________WD13________________) (_______________
Query 721 MKFTYDCHHLITVSGDSCVFIWHLGPEITNCMKQHLLEIDHRQQQQHTNDKKRSGHPRQDTYVSTPSEIHSLSPGEQTED 800
WD40-rpts __WD14________________) (___________________WD15___________________)
Query 801 DLEEECEPEEMLKTPSKDSLDPDPRCLLTNGKLPLWAKRLLGDDDVADGLAFHAKRSYQPHGRWAERAGQEPLKTILDAQ 880
WD40-rpts (__________________WD16_________________)
Query 881 DLDCYFTPMKPESLENSILDSLEPQSLASLLSESESPQEAGRGHPSFLPQQKESSEASELILYSLEAEVTVTGTDSQYCR 960
WD40-rpts (_________________WD17________________)
Query 961 KEVEAGPGDQQGDSYLRVSSDSPKDQSPPEDSGESEADLECSFAAIHSPAPPPDPAPRFATSLPHFPGCAGPTEDELSLP 1040
WD40-rpts
Query 1041 EGPSVPSSSLPQTPEQEKFLRHHFETLTESPCRELFPAALGDVEASEAEDHFFNPRLSISTQFLSSLQKASRFTHTFPPR 1120
WD40-rpts
Query 1121 ATQCLVKSPEVKLMDRGGSQPRAGTGYASPDRTHVLAAGKAEETLEAWRPPPPCLTSLASCVPASSVLPTDRNLPTPTSA 1200
WD40-rpts
Query 1201 PTPGLAQGVHAPSTCSYMEATASSRARISRSISLGDSEGPIVATLAQPLRRPSSVGELASLGQELQAITTATTPSLDSEG 1280
WD40-rpts
Query 1281 QEPALRSWGNHEARANLRLTLSSACDGLLQPPVDTQPGVTVPAVSFPAPSPVEESALRLHGSAFRPSLPAPESPGLPAHP 1360
WD40-rpts
Query 1361 SNPQLPEARPGIPGGTASLLEPTSGALGLLQGSPARWSEPWVPVEALPPSPLELSRVGNILHRLQTTFQEALDLYRVLVS 1440
WD40-rpts
Query 1441 SGQVDTGQQQARTELVSTFLWIHSQLEAECLVGTSVAPAQALPSPGPPSPPTLYPLASPDLQALLEHYSELLVQAVRRKA 1520
WD40-rpts
Query 1521 RGH 1523
WD40-rpts
 17 WD40-repeats found in QUERY=WDR62 (Len=1523): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 2 24-61 3.33 252.03 0.02471 15.0% 25.67 WD 2: Seg 8 101-141 6.59 386.84 0.00038 25.0% 58.57 WD 3: Seg 12 145-185 7.71 433.25 9.0e-05 37.5% 56.66 WD 4: Seg 16 188-225 5.01 321.55 0.00289 17.5% 53.61 WD 5: Seg 21 236-280 3.62 264.31 0.01695 12.5% 40.90 WD 6: Seg 24 282-321 5.82 355.02 0.00102 10.0% 50.58 WD 7: Seg 30 342-387 5.91 358.98 0.00090 20.0% 51.51 WD 8: Seg 34 388-441 5.22 330.08 0.00222 25.0% 52.59 WD 9: Seg 41 482-520 7.92 441.94 6.9e-05 30.0% 47.73 WD10: Seg 44 524-565 6.33 376.18 0.00053 25.0% 54.80 WD11: Seg 48 571-609 6.41 379.26 0.00048 22.5% 48.05 WD12: Seg 51 610-656 5.14 327.09 0.00243 7.5% 56.15 WD13: Seg 55 663-701 7.32 417.03 0.00015 25.0% 52.51 WD14: Seg 59 705-743 9.23 496.05 1.3e-05 32.5% 57.33 WD15: Seg 63 753-796 5.26 332.05 0.00208 15.0% 37.18 WD16: Seg 70 838-878 4.50 300.44 0.00555 10.0% 42.15 WD17: Seg 73 882-920 4.67 307.61 0.00445 17.5% 11.26Multiple sequence alignment of 17 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 24-61 -GV-------P-----A----RRGQS-----SPPPAPPICLRRRT-------------RLSTAS--EE--TVQNRVS WD 2 101-141 -NK-------Q-----Q----HIFNT-----ARKSLSALAFSPDG---K---------YIVTGE--NGHRPAVRIWD WD 3 145-185 -KN-------Q-----V----AEMLG-----HKYGVACVAFSPNM---K---------HIVSMGYQHD--MVLNVWD WD 4 188-225 -KD-------I-----V----VASNK-----VSCRVIALSFSEDS---S---------YFVTVG---N--RHVRFWF WD 5 236-280 STV-------P-----L----VGRSGILGELHNNIFCGVACGRGR---M---------AGSTFC--VS--YSGLLCQ WD 6 282-321 NEK-------R-----V----LEKWI-----NLKVSLSSCLCVSQ---E---------LIFCGC--TD--GIVRIFQ WD 7 342-387 AQG-LEPSFLF-----H----RKAEA-----VYPDTVALTFDPIH---Q---------WLSCVY--KD--HSIYIWD WD 8 388-441 VKD-------INRVGKV----WSELF-----HSSYVWNVEVYPEF---EDQRACLPSGSFLTCS--SD--NTIRFWN WD 9 482-520 -GS-------E-----N----GTPMD-----VKAGVRVMQVSPDG---Q---------HLASGD--RS--GNLRIHE WD10 524-565 -MD-------E-----L----VKVEA-----HDAEVLCLEYSKPETGLT---------LLASAS--RD--RLIHVLN WD11 571-609 --N-------L-----E----QTLDD-----HSSSITAIKFAGNR---D--------IQMISCG--AD--KSIYFRS WD12 610-656 AQQGSDGLHFV-----R----THHVA-----EKTTLYDMDIDITQ---K---------YVAVAC--QD--RNVRVYN WD13 663-701 -KK-------C-----Y----KGSQG-----DEGSLLKVHVDPSG---T---------FLATSC--SD--KSISVID WD14 705-743 -GE-------C-----I----AKMFG-----HSEIITSMKFTYDC---H---------HLITVS--GD--SCVFIWH WD15 753-796 KQH-------L-----LEIDHRQQQQ-----HTNDKKRSGHPRQD---T---------YVSTPS--EI--HSLSPGE WD16 838-878 KRL-------L----GD----DDVAD-----GLAFHAKRSYQPHG---R---------WAERAG--QE--PLKTILD WD17 882-920 -LD-------C-----Y----FTPMK-----PESLENSILDSLEP---Q---------SLASLL--SE--SESPQEA WD40 Template TGE-------C-----L----RTLSG-----HTSGVTSVSFSPDG---K---------RLVSGS--ED--GTIKVWD |
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