WDRR: WD40 Repeat Recognition
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| JobID: U45G41659519142 Submitted: 2022-08-03 17:32:22 You can bookmark this page for further accessing the result in the future. Results on this server will be retained for 30 days. Job status: [Done] Total run time: 79728779 seconds. [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = CsaV3_6G001430 (Len=799) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (CsaV3_6G001430, Len=799): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MNSGDPSMALLAASAGDTVKLFDVSVHSNDLGDPCTLSYTPSPGYQVNSVKWNHTNLVVASAGDDKKISLWRKNGQSMGT 80
WD40-rpts (_________________WD 1________________)
Query 81 IPIAGTDSGDNIEESIFSISFGNKVSRYMCTGGSGHVVRIWDLQRKRCIKWLRGHTNTITGAMYNCKDEHLASISLSGDL 160
WD40-rpts (_________________WD 2_________________) (_________________WD 3_____________
Query 161 ILHNLASGARAAELKDPNEQVLRVLDYSRTSRHLLVTAGDDGTVHLWDTTGRNPKISWQKQHSAPTAGIGFSPSNDKSFA 240
WD40-rpts ___) (__________________WD 4_________________) (_________________WD 5______
Query 241 SVGLDKKLYTYDSGSRRPSSFIAYEAPFSSMAFRDDGLILAAGTSNGRVVFYDVRGKPEPYIVLRAYSSSEAVTSLSWQR 320
WD40-rpts ___________)(__________________WD 6_________________) (________________WD 7
Query 321 LKPVIVNESNCTAEVALLGGAIEDSILMPDPLPSVTTSTGPLSATSGSRNPGRSGSTFEASLTETSSSFSTAEETPLRSH 400
WD40-rpts ________________)(_________________WD 8_________________)________________WD 9___
Query 401 LRSGGSLALARLHAPRSSYNFKDDMEVFSPLVDVQPITPSLDKLWDDHNGSKKDNPFDKKPLSMLFPSSSRRFSSIEDGA 480
WD40-rpts _____________) (_________________WD10________
Query 481 SDHPIFNWKSSSSKQDDIRSSSGQLGSTPAPTVNSKNEDSSITPPEAWGGEKLSEKFAQLRQPMTLPSRFGMLASSSSSQ 560
WD40-rpts ________)
Query 561 TSSSMISGLQDPSSSISQSSITSLTNLNFSYPNLRTKDATSQEVSLSIPEHFSTTAASLSLGTRVNIGLSNTDSPRPSTM 640
WD40-rpts
Query 641 TLPRRFSTYAERLSTTSSFSDGLPAGSPKTKKLGSETREEVLNNLAKFDTLSVTESGIPPAMNGGLLQPQKPLQSDAQQG 720
WD40-rpts
Query 721 NSFTLQLFQRTLEETLDSFQRSIHDDMRNLHLEILRQFHMQEMEMSSVTSTILENQAELIKEVKSLRKENQQLRDLLGS 799
WD40-rpts
 10 WD40-repeats found in QUERY=CsaV3_6G001430 (Len=799): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 3 34-72 7.29 415.82 0.00015 20.0% 52.61 WD 2: Seg 8 83-122 6.79 395.05 0.00030 15.0% 40.96 WD 3: Seg 11 126-164 8.97 485.10 1.8e-05 25.0% 57.77 WD 4: Seg 15 168-208 6.48 382.53 0.00044 27.5% 52.78 WD 5: Seg 19 213-252 7.28 415.38 0.00016 20.0% 55.16 WD 6: Seg 23 253-293 8.54 467.55 3.1e-05 22.5% 54.84 WD 7: Seg 27 300-337 5.41 338.18 0.00172 20.0% 50.91 WD 8: Seg 31 338-377 7.00 403.75 0.00023 17.5% 27.64 WD 9: Seg 34 376-414 5.97 361.10 0.00085 15.0% 3.65 WD10: Seg 36 451-489 3.52 260.05 0.01932 15.0% -0.89Multiple sequence alignment of 10 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 34-72 -P-CTLSYTPSPGYQV-NSVKWNH-T-NLV-VASAGDDKKISLWR WD 2 83-122 -I-AGTDSGDNIEESI-FSISFGN-KVSRY-MCTGGSGHVVRIWD WD 3 126-164 -K-RCIKWLRGHTNTI-TGAMYNC-K-DEH-LASISLSGDLILHN WD 4 168-208 -G-ARAAELKDPNEQVLRVLDYSR-T-SRHLLVTAGDDGTVHLWD WD 5 213-252 -N-PKISWQKQHSAPT-AGIGFSPSN-DKS-FASVGLDKKLYTYD WD 6 253-293 SGSRRPSSFIAYEAPF-SSMAFRD-D-GLI-LAAGTSNGRVVFYD WD 7 300-337 -P-YIVLRAYSSSEAV-TSLSWQR-L-KPV-IVNES-NCTAEVAL WD 8 338-377 LG-GAIEDSILMPDPL-PSVTTST-G-PLS-ATSGSRNPGRSGST WD 9 376-414 -S-TFEASLTETSSSF-STAEETP-L-RSH-LRSGGSLALARLHA WD10 451-489 -S-KKDNPFDKKPLSM-LFPSSSR-R-FSS-IEDGASDHPIFNWK WD40 Template TG-ECLRTLSGHTSGV-TSVSFSP-D-GKR-LVSGSEDGTIKVWD |
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