Input parameters:

  Query = seq-U1LP61330936569 (Len=408)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (seq-U1LP61330936569, Len=408):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MLGFLSARQTGLEDPLRLRRAESTRRVLGLELNKDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQS 80  
WD40-rpts      (____________WD 1___________)   (_________________WD 2_________________)        

Query       81 YYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVA 160 
WD40-rpts              (_________________WD 3_________________)(___________________WD 4________

Query      161 VGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESA 240 
WD40-rpts      ___________)   (_________________WD 5_________________)                   (_____

Query      241 NTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYT 320 
WD40-rpts      ____________WD 6________________)   (___________________WD 7___________________)

Query      321 VYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPDDDETTTKSQLNPAFEDAWSSSDEEGGTSA 400 
WD40-rpts         (_________________WD 8________________)(_________________WD 9________________

Query      401 WSHPQFEK 408 
WD40-rpts      _)      

9 WD40-repeats found in QUERY=seq-U1LP61330936569 (Len=408):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-29       4.03  281.09  0.01010       12.5%     36.34
  WD 2:  Seg  4    33-72       8.28  456.78  4.3e-05       25.0%     49.62
  WD 3:  Seg  9    89-128      7.67  431.44  9.5e-05       32.5%     38.51
  WD 4:  Seg 12   129-172      5.98  361.73  0.00083       17.5%     50.63
  WD 5:  Seg 16   176-215      8.86  480.60  2.1e-05       37.5%     55.27
  WD 6:  Seg 21   235-273      8.60  470.05  2.9e-05       20.0%     44.45
  WD 7:  Seg 24   277-320      6.51  383.56  0.00042       20.0%     51.05
  WD 8:  Seg 28   324-362      9.57  509.85  8.4e-06       35.0%     56.87
  WD 9:  Seg 31   363-402      6.23  371.83  0.00061       15.0%     38.14

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-29     ------------M-----LGFLSARQTG-LEDP---LRLRRAE-STRRVLG
   WD 2   33-72     -NKD-RDVERIHG-----GGINTLDIEPVEGRY---MLSGGSD-GVIVLYD
   WD 3   89-128    -SIG-RDHPDVHR-----YSVETVQWYPHDTGM---FTSSSFD-KTLKVWD
   WD 4  129-172    TNTLQTADVFNFE-----ETVYSHHMSP-VSTKHCLVAVGTRG-PKVQLCD
   WD 5  176-215    -GSC-SHILQGHR-----QEILAVSWSP-RYDY--ILATASAD-SRVKLWD
   WD 6  235-273    -QAV-ESANTAHN-----GKVNGLCFTS-DGLH---LLTVGTD-NRMRLWN
   WD 7  277-320    -GEN-TLVNYGKVCNNSKKGLKFTVSCG-CSSE---FVFVPYG-STIAVYT
   WD 8  324-362    -GEQ-ITMLKGHY-----KTVDCCVFQS-NFQE---LYSGSRD-CNILAWV
   WD 9  363-402    -PSL-YEPVPDDD-----ETTTKSQLNP-AFED---AWSSSDEEGGTSAWS

   WD40 Template    TGEC-LRTLSGHT-----SGVTSVSFSP-DGKR---LVSGSED-GTIKVWD