Input parameters:

  Query = CmaCh12G001470 (Len=478)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CmaCh12G001470, Len=478):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MGGRDHLLEFPFFVLLICFSSISVGFACFLAISRLMEHFQNDDLAVYDFDDGGFFSDDDFHTDQNIEHIDSDFEDDMDTS 80  
WD40-rpts                                                                                      

Query       81 TPKSDTSAFDARNGKDIQGIPWERFAFTRDNYRERRLSQYKNYESLSRSRVELEKECLQVEKGNNFYDFQFNTRLVKSTI 160 
WD40-rpts                                                                    (_________________

Query      161 VHFQLRNLLWATSKHDVYLMQNYSVMHWSPLLRRGKEVLNVAKQIVPTVKRPGVSSQSLSRVQISAMSVKENLIVAGGFQ 240 
WD40-rpts      WD 1________________)                                (______________WD 2________

Query      241 GELICKYLNHPGVAFCTKMTTEENAITNAVDIFHNPNGAMRIVTGNNDAKVRIYDAKTFACLNGFTVGWSVNNTSVSPDG 320 
WD40-rpts      ______)        (_________________WD 3_________________)   (________________WD 4_

Query      321 RMLAVLGDTTECLIADANSGKVIESLKGHLDYSFASAWHPDGNILATGNQDTTCRLWDIRNTSKSIAVLKGRMGAIRCVK 400 
WD40-rpts      _______________)   (_________________WD 5________________)    (_________________

Query      401 FSLDGKFLSMAEPADFVHIYESRTGYEQAQEIDLFGEIAGISFSPDTEALFVGVADRTYGSVLEFNKRHHNKYIDSIF 478 
WD40-rpts      WD 6________________)   (_________________WD 7________________)               

7 WD40-repeats found in QUERY=CmaCh12G001470 (Len=478):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2   143-181      6.53  384.58  0.00041       12.5%     46.90
  WD 2:  Seg  8   214-247      6.65  389.36  0.00035       17.5%     51.34
  WD 3:  Seg 11   256-295      7.07  406.75  0.00021       20.0%     45.88
  WD 4:  Seg 15   299-336      7.35  418.37  0.00014       27.5%     55.71
  WD 5:  Seg 19   340-378     10.37  542.94  3.0e-06       32.5%     52.21
  WD 6:  Seg 23   383-421      8.97  485.35  1.8e-05       22.5%     55.85
  WD 7:  Seg 27   425-463      7.30  416.19  0.00015       25.0%     53.68

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  143-181    GNNFYDFQFNTRLVKSTIVHFQLR-NLLWATSKHDVYLMQ
   WD 2  214-247    -----VSSQSLSRVQISAMSVKEN-LIVAGGFQGELICKY
   WD 3  256-295    CTKMTTEENAITNAVDIFHNPNGAMRIVTGNNDAKVRIYD
   WD 4  299-336    FACLNGFTVGWS-VNNTSVSPDGR-MLAVLGDTTECLIAD
   WD 5  340-378    GKVIESLKGHLDYSFASAWHPDGN-ILATGNQDTTCRLWD
   WD 6  383-421    SKSIAVLKGRMGAIRCVKFSLDGK-FLSMAEPADFVHIYE
   WD 7  425-463    GYEQAQEIDLFGEIAGISFSPDTE-ALFVGVADRTYGSVL

   WD40 Template    GECLRTLSGHTSGVTSVSFSPDGK-RLVSGSEDGTIKVWD