WDRR: WD40 Repeat Recognition
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| JobID: TT03U1525483411 Submitted: 2018-05-05 09:23:31 You can bookmark this page for further accessing the result in the future. Results on this server will be retained for 30 days. Job status: [Done] Total run time: 213768155 seconds. [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = (Len=569) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (, Len=569): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MATEGGGKEMNEIKTQFTTREGLYKLLPHSEYSRPNRVPFNSQGSNPVRVSFVNLNDQSGNGDRLCFNVGRELYFYIYKG 80
WD40-rpts (_________________WD 1_________________) (_____________WD 2________
Query 81 VRKAADLSKPIDKRIYKGTQPTCHDFNHLTATAESVSLLVGFSAGQVQLIDPIKKETSKLFNEERLIDKSRVTCVKWVPG 160
WD40-rpts _____) (_________________WD 3________________) (________________WD
Query 161 SESLFLVAHSSGNMYLYNVEHTCGTTAPHYQLLKQGESFAVHTCKSKSTRNPLLKWTVGEGALNEFAFSPDGKFLACVSQ 240
WD40-rpts 4_______________)(___________WD 5___________) (_________________WD 6_________
Query 241 DGFLRVFNFDSVELHGTMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFVDCRVIARGHGHKSWVSVVAFDPYTTSVE 320
WD40-rpts _______) (_________________WD 7________________) (____________________WD 8__
Query 321 EGDPMEFSGSDEDFQDLLHFGRDRANSTQSRLSKRNSTDSRPVSVTYRFGSVGQDTQLCLWDLTEDILFPHQPLSRARTH 400
WD40-rpts __________________)(___________________WD 9__________________) (_________
Query 401 TNVMNATSPPAGSNGNSVTTPGNSVPPPLPRSNSLPHSAVSNAGSKSSVMDGAIASGVSKFATLSLHDRKERHHEKDHKR 480
WD40-rpts _________WD10_________________) (_________________WD11________________)(_____
Query 481 NHSMGHISSKSSDKLNLVTKTKTDPAKTLGTPLCPRMEDVPLLEPLICKKIAHERLTVLIFLEDCIVTACQEGFICTWGR 560
WD40-rpts __________WD12_______________) (________________WD13_______________)
Query 561 PGKVVSFNP 569
WD40-rpts
 13 WD40-repeats found in QUERY= (Len=569): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 1 13-52 6.48 382.24 0.00044 10.0% 3.74 WD 2: Seg 3 55-86 4.28 291.49 0.00732 17.5% 45.68 WD 3: Seg 6 93-131 6.55 385.25 0.00040 10.0% 50.68 WD 4: Seg 11 142-178 5.58 345.30 0.00138 22.5% 45.75 WD 5: Seg 14 179-206 3.70 267.34 0.01544 10.0% 36.57 WD 6: Seg 17 210-248 9.08 489.86 1.6e-05 30.0% 55.14 WD 7: Seg 21 252-290 9.77 518.25 6.4e-06 37.5% 57.13 WD 8: Seg 25 294-339 6.66 389.62 0.00035 22.5% 43.93 WD 9: Seg 29 340-382 6.35 376.81 0.00052 22.5% 45.94 WD10: Seg 33 391-431 5.62 346.86 0.00132 12.5% 28.36 WD11: Seg 36 436-474 5.64 347.60 0.00129 10.0% 38.70 WD12: Seg 39 475-510 5.75 352.10 0.00112 17.5% 20.10 WD13: Seg 41 523-559 4.95 319.30 0.00309 22.5% 44.88Multiple sequence alignment of 13 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 13-52 IK-TQFTTREGLYKLLPHSEYSR--PNR--VP-FNS-------QGSNPVRVSF WD 2 55-86 --------LNDQSGNGDRLCF-N--VGR--EL-YFY-------IYKGVRKAAD WD 3 93-131 -K-RIYKGTQPTCHDFNHLTATA--ESV--SL-LVG-------FSAGQVQLID WD 4 142-178 NE-ERL----IDKSRVTCVKWVP--GSE--SLFLVA-------HSSGNMYLYN WD 5 179-206 -------------VEHTCGTTAP--HYQ--LL-KQG-------ESFAVHTCKS WD 6 210-248 -R-NPLLKWTVGEGALNEFAFSP--DGK--FL-ACV-------SQDGFLRVFN WD 7 252-290 -V-ELHGTMKSYFGGLLCVCWSP--DGK--YI-VTG-------GEDDLVTVWS WD 8 294-339 -C-RVIARGHGHKSWVSVVAFDP--YTT--SV-EEGDPMEFSGSDEDFQDLLH WD 9 340-382 FGRDRANSTQSRLSKRNSTDSRP--VSVTYRF-GSV-------GQDTQLCLWD WD10 391-431 -H-QPLSRARTHTNVMNATSPPAGSNGN--SV-TTP-------GNSVPPPLPR WD11 436-474 -P-HSAVSNAGSKSSVMDGAIAS--GVS--KF-ATL-------SLHDRKERHH WD12 475-510 -----EKDHKRNHSMGHISSKSS--DKL--NL-VTK-------TKTDPAKTLG WD13 523-559 -L-EPLICKKIAHERLTVLIFLE--DC----I-VTA-------CQEGFICTWG WD40 Template TG-ECLRTLSGHTSGVTSVSFSP--DGK--RL-VSG-------SEDGTIKVWD |
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