Input parameters:

  Query = CmaCh04G030330 (Len=513)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CmaCh04G030330, Len=513):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSTLEIEARDVIKIVLQFCKENSLHQTFQTLQNECQVSLNTVDSIETFVADINSGRWDAILPQVSQLKLPRNKLEDLYEQ 80  
WD40-rpts                                                                                      

Query       81 IVLEMIELRELDTARAILRQTQVMGVMKQEQPERYLRLEHLLVRTYFDPNEAYQDSTKEKRRAQIAQALAAEVTVVAPSR 160 
WD40-rpts                                                                           (__________

Query      161 LMALIGQALKWQQHQGLLPPGTQFDLFRGTAAMKQDVEDVFPTTLSHTIKFGSKSHAECARFSPDGQFLVSCSVDGFIEV 240 
WD40-rpts      ____________WD 1______________________)___________________WD 2__________________

Query      241 WDYISGKLKKDLQYQADETFMMHDDPVLCVDFSRDSEMIASGSQDGKIKVWRIRTGQCLRRLERAHSQGVTSVVFSRDGT 320 
WD40-rpts      _)           (_________________WD 3________________)   (_________________WD 4___

Query      321 QLLSTSFDTTARIHGLKSGKLLKEFRGHSSYVNDAVFTNDVARVITASSDCTVKVWDVKTTDCLHTFKPPPPLRGGDASV 400 
WD40-rpts      ______________)   (_________________WD 5________________)         (_____________

Query      401 NSVHLFPKNADHIVVCNKTSSIYIMTLQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCIGEDRNMYCFSHQSGKLEHLM 480 
WD40-rpts      ____WD 6_________________)     (_________________WD 7________________)   (______

Query      481 KVHEKDVIGVNHHPHRNLVATYSEDNTMKLWKP 513 
WD40-rpts      ___________WD 8________________) 

8 WD40-repeats found in QUERY=CmaCh04G030330 (Len=513):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1   150-199      3.70  267.62  0.01530       17.5%     32.85
  WD 2:  Seg  4   198-242      8.90  482.20  2.0e-05       50.0%     41.93
  WD 3:  Seg  9   254-292      9.63  512.51  7.7e-06       40.0%     46.61
  WD 4:  Seg 12   296-335      9.28  497.88  1.2e-05       50.0%     53.80
  WD 5:  Seg 16   339-377     10.41  544.73  2.8e-06       40.0%     55.97
  WD 6:  Seg 21   387-426      6.64  388.90  0.00036       20.0%     36.30
  WD 7:  Seg 24   432-470      6.93  400.77  0.00025       12.5%     50.14
  WD 8:  Seg 28   474-512      9.29  498.52  1.2e-05       27.5%     51.52

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  150-199    AAEVTVVAP--------SRLMALIGQALKWQQHQGLLP-PGTQFDLFRGTAAMKQDVED
   WD 2  198-242    EDVFPTTLSHTIKFGSK-----------SHAECARFSP-DGQF--LVSCSVDGFIEVWD
   WD 3  254-292    -YQADETFM-----MHD-----------DPVLCVDFSR-DSEM--IASGSQDGKIKVWR
   WD 4  296-335    -GQCLRRLE----RAHS-----------QGVTSVVFSR-DGTQ--LLSTSFDTTARIHG
   WD 5  339-377    -GKLLKEFR-----GHS-----------SYVNDAVFTN-DVAR--VITASSDCTVKVWD
   WD 6  387-426    -FKPPPPLR-----GGD-----------ASVNSVHLFPKNADH--IVVCNKTSSIYIMT
   WD 7  432-470    -VKSFSSGK-----REG-----------GDFVAACVSP-KGEW--IYCIGEDRNMYCFS
   WD 8  474-512    -GKLEHLMK-----VHE-----------KDVIGVNHHP-HRNL--VATYSEDNTMKLWK

   WD40 Template    TGECLRTLS-----GHT-----------SGVTSVSFSP-DGKR--LVSGSEDGTIKVWD