Input parameters:

  Query = CsaV3_3G032410 (Len=453)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CsaV3_3G032410, Len=453):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MDAGSLSTSNANHSRCPLQEQHLQRKQSRENLDRFIPNRSAMDFDYAHYMVTEGRKGKENPSFSSPSREAYQKRLAETFN 80  
WD40-rpts                                                                                      

Query       81 MNRTRILAFKNKPPAPVELIPKEFFSSVSHDKPVKARRHIPQTSEKTLDAPDLVDDYYLNLLDWGSSNVLAIALGNTVYL 160 
WD40-rpts      (________________WD 1________________)   (__________________WD 2________________

Query      161 WNATDGSTSELVTVDDEVGPVTSVSWAPDGRHIAIGLNNSEVQLWDSTANRQLRTLKGGHRMRVGSLAWNNHILTTGGMD 240 
WD40-rpts      _)(___________________WD 3___________________)   (________________WD 4__________

Query      241 GKILNNDVRIRDHIVETYRGHDQEVCGLKWSLSGQQLASGGNDNVLHIWDRSMASSNSATQWLHRLEDHTSAVKALAWCP 320 
WD40-rpts      ______)    (_________________WD 5________________)(_______________________WD 6__

Query      321 FQGNLLATGGGAGDRTIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFSQNQLTLWKYPSMVKMGELTGHTSR 400 
WD40-rpts      ____________________)   (_________________WD 7_________________)   (____________

Query      401 VLFMAQSPDGCTVASAAADETLRFWNVFGTPEVAKPAPKSSVTEPFAHLNRIR 453 
WD40-rpts      _____WD 8________________)                           

8 WD40-repeats found in QUERY=CsaV3_3G032410 (Len=453):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    81-118      5.04  322.65  0.00279       20.0%     38.38
  WD 2:  Seg  6   122-162      5.04  322.91  0.00277       10.0%     51.54
  WD 3:  Seg 10   163-206      8.82  478.87  2.2e-05       32.5%     58.70
  WD 4:  Seg 14   210-247      5.42  338.74  0.00169       35.0%     53.06
  WD 5:  Seg 18   252-290      9.44  504.76  9.8e-06       30.0%     53.81
  WD 6:  Seg 22   291-341      6.66  389.64  0.00035       35.0%     41.55
  WD 7:  Seg 26   345-384      5.54  343.33  0.00147       17.5%     51.04
  WD 8:  Seg 30   388-426      9.49  506.67  9.2e-06       35.0%     56.48

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   81-118    -M--------N----RTRILA-FK--NKPPAPVELIPK-EFFS---S-VSHDKPVKARR
   WD 2  122-162    -Q--------T----SEKTLD-APDLVDDYYLNLLDWGSSNVL---A-IALGNTVYLWN
   WD 3  163-206    AT--------DGSTSELVTVD-DE--VGPVTSVSWAPDGRHIA---I-GLNNSEVQLWD
   WD 4  210-247    -N--------R----QLRTLKGGH--RMRVGSLAW--NNHILT---T-GGMDGKILNND
   WD 5  252-290    -D--------H----IVETYR-GH--DQEVCGLKWSLSGQQLA---S-GGNDNVLHIWD
   WD 6  291-341    RSMASSNSATQ----WLHRLE-DH--TSAVKALAWCPFQGNLLATGG-GAGDRTIKFWN
   WD 7  345-384    -G--------A----CLNSVD-TG--SQVCALLWNKNERELLS---SHGFSQNQLTLWK
   WD 8  388-426    -M--------V----KMGELT-GH--TSRVLFMAQSPDGCTVA---S-AAADETLRFWN

   WD40 Template    TG--------E----CLRTLS-GH--TSGVTSVSFSPDGKRLV---S-GSEDGTIKVWD