Input parameters:

  Query = CmaCh14G012730 (Len=511)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CmaCh14G012730, Len=511):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MKGGDEAMAAPVASSQPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKTGNHLATGDRGGRVVLFERTDRKDNGGSRKDL 80  
WD40-rpts                                (_________________WD 1_________________)              

Query       81 EKMDHSVSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKIKKISSMNVD 160 
WD40-rpts                          (____________________WD 2___________________)               

Query      161 ASKAVGSECIASSSISSNSTHLLNGGSCDGVYNHPSNDLLGAISSLRLQVTSHESSLLARCRRVYAHAHDYHINSISNNS 240 
WD40-rpts                          (_____________WD 3_____________)(____________________WD 4___

Query      241 DGETFISADDLRINLWNLEICNQSFNIVDVKPTNMEDLTEVITSAEFHPTHCNTLAYSSSKGSIRLVDLRQSALCDSHAK 320 
WD40-rpts      ________________)             (________________WD 5________________)            

Query      321 LFEEPETPGSRSFFTEIIASISDIKFGTNGRYILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFE 400 
WD40-rpts        (___________________WD 6__________________)              (___________________W

Query      401 CCLSGDGSRVTTGSYSNLFRVFGCSPGSTEATTLEASKNPTRRQVQTPSRPSRSLSSSFTRVVRRGGSESPGADANGNPF 480 
WD40-rpts      D 7___________________)    (_________________WD 8________________)      (_______

Query      481 DFTTKLLHLAWHPAENSIACAAANSLYMYYA 511 
WD40-rpts      __________WD 9________________)

9 WD40-repeats found in QUERY=CmaCh14G012730 (Len=511):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    27-66       9.07  489.38  1.6e-05       12.5%     43.75
  WD 2:  Seg  6   101-145      4.57  303.31  0.00508       17.5%     44.26
  WD 3:  Seg 10   181-212      2.78  229.60  0.04897        7.5%     16.72
  WD 4:  Seg 12   213-257      6.09  366.28  0.00072       25.0%     46.24
  WD 5:  Seg 17   271-308      6.34  376.42  0.00053       25.0%     43.50
  WD 6:  Seg 21   323-365      6.07  365.55  0.00074       17.5%     39.51
  WD 7:  Seg 25   380-423      5.65  348.10  0.00127       17.5%     45.79
  WD 8:  Seg 28   428-466      5.63  347.20  0.00130       10.0%     40.92
  WD 9:  Seg 31   473-511      3.34  252.50  0.02436        5.0%     32.99

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   27-66     GE----RTAGE------E---VQEVD----IISAIEF--DKTG-NHLATGDRGGRVVLFE
   WD 2  101-145    SH----EPEFD------YLKSLEIEE----KINKIRWCQTANG-ALFLLSTNDKTIKFWK
   WD 3  181-212    ---------------------HLLNG----GSCDGVY--NHPS-NDLLGAISSLRLQVTS
   WD 4  213-257    HE----SSLLARCRRVYA---HAHDY----HINSISN--NSDG-ETFISAD-DLRINLWN
   WD 5  271-308    -------KPTN------M---EDLTE----VITSAEF--HPTHCNTLAYSSSKGSIRLVD
   WD 6  323-365    EEPETPGSRSF------F---TEIIA----SISDIKF--GTNG-RYILSRD-YMTLKLWD
   WD 7  380-423    EH----LRPKL------C---DLYENDSIFDKFECCL--SGDG-SRVTTGSYSNLFRVFG
   WD 8  428-466    -S----TEATT------L---EASKN----PTRRQVQ--TPSR-PSRSLSSSFTRVVRRG
   WD 9  473-511    -A----DANGN------P---FDFTT----KLLHLAW--HPAE-NSIACAAANSLYMYYA

   WD40 Template    TG----ECLRT------L---SGHTS----GVTSVSF--SPDG-KRLVSGSEDGTIKVWD