JobID: TKZ3B1659462380 - WDRR: WD40 Repeat Recognition

Input parameters:

  Query = CmaCh09G001010 (Len=1493)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CmaCh09G001010, Len=1493):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAGEYRFAMDQKDIVRLLVATIGDFTRCRLINKEHRNLHKEQCAERLAAEDGSHDKDTEVRYSDQAVLANLDWGIEALEE 80  
WD40-rpts                                                                                      

Query       81 ALNTSNIETKFARLDHAEKMLQVCALLNSNEKTAGVPNFYLSAWAHLNLSYLWKLRGNVHNSVLHILEMFIVDPFFSRID 160 
WD40-rpts                                                                                      

Query      161 FAPELWKELFLPHMSSIVGWYSEERHRLVIEVIPDSSDLSFTADIDQFFNESLIFSLRPDQVEKLQKLEKLYGESLDENS 240 
WD40-rpts                                                                                      

Query      241 RLFAKYFKDCMSSDSSSTKKVAPMLPIAEPPMTPLHEVSRSIPDYIKFGPILPKSAGFSSILLRSKDGATEASRPKGTSS 320 
WD40-rpts                                                                                      

Query      321 PANSSEKFAGRYAQNDSLEEIENDSDHEPFDSYELSDTVTHKLLSPSSTRTSEDEQIGPKGETSKMGSCKRSPTIFSPIS 400 
WD40-rpts                                                                                      

Query      401 SPSIPSPKDLSPTANEKCKNESRSALRLLSSRFGGQRVATYVPRSPATGSDHSFSPVESEGEKDRHRRRYRQTHNAIYND 480 
WD40-rpts                                                                                      

Query      481 VSSQDFENCLIDKLEEESRSRSSEIVTHIVRPPKDFVCPITGQIFSEPVTLETGQTYERKAIQEWLKRGNTTCPITRQPL 560 
WD40-rpts                                                                                      

Query      561 SSTVMPKMNYVLKRLITSWQEQHPDLAQDCSWTGTSVVSTVSSSFKMANSLASTPCRPFHIPLNSTYESLNQKGKRLMQE 640 
WD40-rpts                                                                                      

Query      641 AVSSSPTSVISQATVEKIINSLKPFVSCLCNFESLKQCETAVLAIAGFWKDSKGDLAVHSYLSELAVVNGFVEILLNSRE 720 
WD40-rpts                                                                                      

Query      721 REVLRTSIYVLSELICADGNVGESLSSLDSDFYCLASLLTSGLSEASVLMCLLRPTFTQLSAHDLIPSLAQMIQKKNEEF 800 
WD40-rpts                                                                                      

Query      801 DHLPFVIEPKNAAIAMLEQIFMGGDETSQSRNAERFTSAEGIPALVKFLGRVEVRRPILSILLCCMRVDQGCKDSIAEEI 880 
WD40-rpts                                                                                      

Query      881 ELAPVLEFLHTGNDDDRGLCVAFLSELVQMHRRTKCNQILQTIKDEGAFSTMHTLLTYLRMAPIEQQPGIGSLLLQLDLL 960 
WD40-rpts                                                                                      

Query      961 TEPRRMSIYREESIDALFEAFRRKDNYNSQIAAVDASLYLSGRLTSSGKSYTEAWLLKLAGFDQPYNALMKAEGLRKPDY 1040
WD40-rpts                                                                                      

Query     1041 ELSEREEEEKAVSVWEKRIALVLCNHEKGYIFEVMKECLKSKSLEMAKSCLVIVSWLCHMVSTLPDTGVQETARRFLLDE 1120
WD40-rpts                                                                                      

Query     1121 LVNVLQSSNSLEEKILACLVLKTFISDPAALEELGLHATSINKTLRKLRRSSLVVNDIMKALMNVPSVDATELWSYTEVG 1200
WD40-rpts                                                                                (_____

Query     1201 ALDSSSNGEVLSLVHLNGRVLSSHSDGTIKVWDAGDKVLKLIQEARKHTKAVTCLCVSSSGDALYSGSLDKTIRVWTVKC 1280
WD40-rpts      ____________WD 1________________)(___________________WD 2___________________)  (

Query     1281 EKIQCVQVHEVKEPIYDMKANANVACFVSQGTGVKVYNFSGVPKHINFNKYVKSLALSEDKLYCGCSGDCILEVDLTKHT 1360
WD40-rpts      _________________WD 3________________)(________________WD 4_______________)     

Query     1361 TSTFYAGVRKLLWKQNIYSLHLHGDLLFAAGSAVDGTAGKTFSLSNKTMVGSFSPGVDIHHMAASTDLLFTASRLGMIIE 1440
WD40-rpts           (________________WD 5________________)                                     

Query     1441 VLSKEKYTKIGSVKLGSASGSHTKITYLTTDDDGGLLFVGTAGGKIQVWGLME 1493
WD40-rpts         (_____________________WD 6____________________)

6 WD40-repeats found in QUERY=CmaCh09G001010 (Len=1493):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  6  1195-1233     5.79  353.63  0.00107       32.5%     44.86
  WD 2:  Seg 10  1234-1277     9.46  505.62  9.5e-06       40.0%     51.36
  WD 3:  Seg 14  1280-1318     6.89  399.20  0.00026       12.5%     48.15
  WD 4:  Seg 18  1319-1355     4.93  318.43  0.00318       20.0%     44.01
  WD 5:  Seg 23  1366-1403     4.13  285.33  0.00886       17.5%     40.81
  WD 6:  Seg 30  1444-1490     7.96  443.48  6.6e-05       27.5%     53.00

Multiple sequence alignment of 6 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1 1195-1233   SYT----EVG-------ALDSSSNGEV-LSLVHLNGRVLSSHSDGT-IKVWD
   WD 2 1234-1277   AGDKVLKLIQ-------EARKHTKAVTCLCVSSSGDALYSGSLDKT-IRVWT
   WD 3 1280-1318   -CE----KIQ-------CVQVHEVKEPIYDMKANANVACFVSQGTG-VKVYN
   WD 4 1319-1355   -FS----GVP-------KHINFNKYVKSLALSEDK--LYCGCSGDC-ILEVD
   WD 5 1366-1403   AG-------V-------RKLLWKQNIYSLHLHGDLLFAAGSAVDGTAGKTFS
   WD 6 1444-1490   KEK----YTKIGSVKLGSASGSHTKITYLTTDDDGGLLFVGTAGGK-IQVWG

   WD40 Template    TGE----CLR-------TLSGHTSGVTSVSFSPDGKRLVSGSEDGT-IKVWD