Input parameters:

  Query = seq-TKSSK1348122591 (Len=1518)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (seq-TKSSK1348122591, Len=1518):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAAVGSGGYARNDAGEKLPSVMAGVPARRGQSSPPPAPPICLRRRTRLSTASEETVQNRVSLEKVLGITAQNSSGLTCDP 80  
WD40-rpts                             (________________WD 1________________)_______________WD 2

Query       81 GTGHVAYLAGCVVVILDPKENKQQHIFNTARKSLSALAFSPDGKYIVTGENGHRPAVRIWDVEEKNQVAEMLGHKYGVAC 160 
WD40-rpts      ________________)   (__________________WD 3_________________)   (_______________

Query      161 VAFSPNMKHIVSMGYQHDMVLNVWDWKKDIVVASNKVSCRVIALSFSEDSSYFVTVGNRHVRFWFLEVSTETKVTSTVPL 240 
WD40-rpts      ___WD 4_________________)  (________________WD 5________________)          (____

Query      241 VGRSGILGELHNNIFCGVACGRGRMAGSTFCVSYSGLLCQFNEKRVLEKWINLKVSLSSCLCVSQELIFCGCTDGIVRIF 320 
WD40-rpts      ________________WD 6___________________) (_________________WD 7_________________

Query      321 QAHSLHYLANLPKPHYLGVDVAQGLEPSFLFHRKAEAVYPDTVALTFDPIHQWLSCVYKDHSIYIWDVKDINRVGKVWSE 400 
WD40-rpts      )                    (____________________WD 8____________________)(____________

Query      401 LFHSSYVWNVEVYPEFEDQRACLPSGSFLTCSSDNTIRFWNLDSSPDSHWQKNIFSNTLLKVVYVENDIQHLQDMSHFPD 480 
WD40-rpts      ____________WD 9________________________)                                       

Query      481 RGSENGTPMDVKAGVRVMQVSPDGQHLASGDRSGNLRIHELHFMDELVKVEAHDAEVLCLEYSKPETGLTLLASASRDRL 560 
WD40-rpts           (_______________WD10______________)   (__________________WD11______________

Query      561 IHVLNVEKNYNLEQTLDDHSSSITAIKFAGNRDIQMISCGADKSIYFRSAQQGSDGLHFVRTHHVAEKTTLYDMDIDITQ 640 
WD40-rpts      ____)     (_________________WD12________________)(_____________________WD13_____

Query      641 KYVAVACQDRNVRVYNTVNGKQKKCYKGSQGDEGSLLKVHVDPSGTFLATSCSDKSISVIDFYSGECIAKMFGHSEIITS 720 
WD40-rpts      _______________)      (_________________WD14________________)   (_______________

Query      721 MKFTYDCHHLITVSGDSCVFIWHLGPEITNCMKQHLLEIDHRQQQQHTNDKKRSGHPRQDTYVSTPSEIHSLSPGEQTED 800 
WD40-rpts      __WD15________________)         (___________________WD16___________________)    

Query      801 DLEEECEPEEMLKTPSKDSLDPDPRCLLTNGKLPLWAKRLLGDDDVADGLAFHAKRSYQPHGRWAERAGQEPLKTILDAQ 880 
WD40-rpts                                   (______________________WD17_____________________)  

Query      881 DLDCYFTPMKPESLENSILDSLEPQSLASLLSESESPQEAGRGHPSFLPQQKESSEASELILYSLEAEVTVTGTDSQYCR 960 
WD40-rpts       (_________________WD18________________)                                        

Query      961 KEVEAGPGDQQGDSYLRVSSDSPKDQSPPEDSGESEADLECSFAAIHSPAPPPDPAPRFATSLPHFPGCAGPTEDELSLP 1040
WD40-rpts                                                                                      

Query     1041 EGPSVPSSSLPQTPEQEKFLRHHFETLTESPCRALGDVEASEAEDHFFNPRLSISTQFLSSLQKASRFTHTFPPRATQCL 1120
WD40-rpts                                                                                      

Query     1121 VKSPEVKLMDRGGSQPRAGTGYASPDRTHVLAAGKAEETLEAWRPPPPCLTSLASCVPASSVLPTDRNLPTPTSAPTPGL 1200
WD40-rpts                                                                                      

Query     1201 AQGVHAPSTCSYMEATASSRARISRSISLGDSEGPIVATLAQPLRRPSSVGELASLGQELQAITTATTPSLDSEGQEPAL 1280
WD40-rpts                                                                                      

Query     1281 RSWGNHEARANLRLTLSSACDGLLQPPVDTQPGVTVPAVSFPAPSPVEESALRLHGSAFRPSLPAPESPGLPAHPSNPQL 1360
WD40-rpts                                                                                      

Query     1361 PEARPGIPGGTASLLEPTSGALGLLQGSPARWSEPWVPVEALPPSPLELSRVGNILHRLQTTFQEALDLYRVLVSSGQVD 1440
WD40-rpts                                                                                      

Query     1441 TGQQQARTELVSTFLWIHSQLEAECLVGTSVAPAQALPSPGPPSPPTLYPLASPDLQALLEHYSELLVQAVRRKARGH 1518
WD40-rpts                                                                                    

18 WD40-repeats found in QUERY=seq-TKSSK1348122591 (Len=1518):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3    24-61       3.83  272.71  0.01308       15.0%     22.71
  WD 2:  Seg  5    60-97       3.39  254.88  0.02265        7.5%     45.80
  WD 3:  Seg  9   101-141      6.71  391.83  0.00033       25.0%     57.85
  WD 4:  Seg 13   145-185      7.80  436.81  8.1e-05       37.5%     56.27
  WD 5:  Seg 17   188-225      5.07  324.13  0.00266       17.5%     53.39
  WD 6:  Seg 22   236-280      3.88  274.87  0.01224       12.5%     41.58
  WD 7:  Seg 25   282-321      5.90  358.31  0.00092       10.0%     50.76
  WD 8:  Seg 31   342-387      6.04  364.10  0.00077       20.0%     49.88
  WD 9:  Seg 35   388-441      5.30  333.57  0.00199       25.0%     52.80
  WD10:  Seg 42   486-520      7.33  417.51  0.00015       27.5%     47.40
  WD11:  Seg 45   524-565      6.37  377.72  0.00051       25.0%     54.87
  WD12:  Seg 49   571-609      6.46  381.71  0.00045       22.5%     48.26
  WD13:  Seg 52   610-656      5.35  335.72  0.00186        7.5%     56.41
  WD14:  Seg 56   663-701      7.41  420.78  0.00013       25.0%     51.97
  WD15:  Seg 60   705-743      9.26  497.25  1.2e-05       32.5%     57.20
  WD16:  Seg 64   753-796      5.36  335.94  0.00185       15.0%     35.88
  WD17:  Seg 69   830-878      4.84  314.71  0.00357       12.5%     47.62
  WD18:  Seg 73   882-920      5.25  331.55  0.00212       17.5%     10.66

Multiple sequence alignment of 18 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   24-61     -GV-------P-----A---------RRGQS-----SPPPAPPICLRRRT-------------RLSTAS--EE--TVQNRVS
   WD 2   60-97     -VS-------L-----E---------KVLGI-----TAQNSSGLTCDPGT---G---------HVAYLA---G--CVVVILD
   WD 3  101-141    -NK-------Q-----Q---------HIFNT-----ARKSLSALAFSPDG---K---------YIVTGE--NGHRPAVRIWD
   WD 4  145-185    -KN-------Q-----V---------AEMLG-----HKYGVACVAFSPNM---K---------HIVSMGYQHD--MVLNVWD
   WD 5  188-225    -KD-------I-----V---------VASNK-----VSCRVIALSFSEDS---S---------YFVTVG---N--RHVRFWF
   WD 6  236-280    STV-------P-----L---------VGRSGILGELHNNIFCGVACGRGR---M---------AGSTFC--VS--YSGLLCQ
   WD 7  282-321    NEK-------R-----V---------LEKWI-----NLKVSLSSCLCVSQ---E---------LIFCGC--TD--GIVRIFQ
   WD 8  342-387    AQG-LEPSFLF-----H---------RKAEA-----VYPDTVALTFDPIH---Q---------WLSCVY--KD--HSIYIWD
   WD 9  388-441    VKD-------INRVGKV---------WSELF-----HSSYVWNVEVYPEF---EDQRACLPSGSFLTCS--SD--NTIRFWN
   WD10  486-520    --------------------------GTPMD-----VKAGVRVMQVSPDG---Q---------HLASGD--RS--GNLRIHE
   WD11  524-565    -MD-------E-----L---------VKVEA-----HDAEVLCLEYSKPETGLT---------LLASAS--RD--RLIHVLN
   WD12  571-609    --N-------L-----E---------QTLDD-----HSSSITAIKFAGNR---D--------IQMISCG--AD--KSIYFRS
   WD13  610-656    AQQGSDGLHFV-----R---------THHVA-----EKTTLYDMDIDITQ---K---------YVAVAC--QD--RNVRVYN
   WD14  663-701    -KK-------C-----Y---------KGSQG-----DEGSLLKVHVDPSG---T---------FLATSC--SD--KSISVID
   WD15  705-743    -GE-------C-----I---------AKMFG-----HSEIITSMKFTYDC---H---------HLITVS--GD--SCVFIWH
   WD16  753-796    KQH-------L-----L-----EIDHRQQQQ-----HTNDKKRSGHPRQD---T---------YVSTPS--EI--HSLSPGE
   WD17  830-878    NGK-------L-----PLWAKRLLGDDDVAD-----GLAFHAKRSYQPHG---R---------WAERAG--QE--PLKTILD
   WD18  882-920    -LD-------C-----Y---------FTPMK-----PESLENSILDSLEP---Q---------SLASLL--SE--SESPQEA

   WD40 Template    TGE-------C-----L---------RTLSG-----HTSGVTSVSFSPDG---K---------RLVSGS--ED--GTIKVWD