WDRR: WD40 Repeat Recognition
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| JobID: TIFQB1349824303 Submitted: 2012-10-10 07:11:43 You can bookmark this page for further accessing the result in the future. Results on this server will be retained for 30 days. Job status: [Done] Total run time: 389428151 seconds. [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = HsUAF1 (Len=677) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (HsUAF1, Len=677): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MAAHHRQNTAGRRKVQVSYVIRDEVEKYNRNGVNALQLDPALNRLFTAGRDSIIRIWSVNQHKQDPYIASMEHHTDWVND 80
WD40-rpts (________________WD 1_______________)(____________________W
Query 81 IVLCCNGKTLISASSDTTVKVWNAHKGFCMSTLRTHKDYVKALAYAKDKELVASAGLDRQIFLWDVNTLTALTASNNTVT 160
WD40-rpts D 2___________________) (_________________WD 3________________) (______
Query 161 TSSLSGNKDSIYSLAMNQLGTIIVSGSTEKVLRVWDPRTCAKLMKLKGHTDNVKALLLNRDGTQCLSGSSDGTIRLWSLG 240
WD40-rpts _____________WD 4__________________) (_________________WD 5________________)(_
Query 241 QQRCIATYRVHDEGVWALQVNDAFTHVYSGGRDRKIYCTDLRNPDIRVLICEEKAPVLKMELDRSADPPPAIWVATTKST 320
WD40-rpts _________________WD 6__________________) (__________________WD 7______________
Query 321 VNKWTLKGIHNFRASGDYDNDCTNPITPLCTQPDQVIKGGASIIQCHILNDKRHILTKDTNNNVAYWDVLKACKVEDLGK 400
WD40-rpts ____) (________________________WD 8________________________)
Query 401 VDFEDEIKKRFKMVYVPNWFSVDLKTGMLTITLDESDCFAAWVSAKDAGFSSPDGSDPKLNLGGLLLQALLEYWPRTHVN 480
WD40-rpts (_____________________WD 9_____________________)
Query 481 PMDEEENEVNHVNGEQENRVQKGNGYFQVPPHTPVIFGEAGGRTLFRLLCRDSGGETESMLLNETVPQWVIDITVDKNMP 560
WD40-rpts
Query 561 KFNKIPFYLQPHASSGAKTLKKDRLSASDMLQVRKVMEHVYEKIINLDNESQTTSSSNNEKPGEQEKEEDIAVLAEEKIE 640
WD40-rpts
Query 641 LLCQDQVLDPNMDLRTVKHFIWKSGGDLTLHYRQKST 677
WD40-rpts
 9 WD40-repeats found in QUERY=HsUAF1 (Len=677): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 3 22-58 7.71 432.99 9.1e-05 22.5% 48.69 WD 2: Seg 6 59-103 8.98 485.70 1.8e-05 32.5% 56.29 WD 3: Seg 10 107-145 9.25 496.88 1.2e-05 30.0% 57.20 WD 4: Seg 15 154-196 8.84 479.84 2.1e-05 30.0% 49.92 WD 5: Seg 19 200-238 9.92 524.37 5.3e-06 40.0% 51.37 WD 6: Seg 23 239-280 8.34 459.05 4.0e-05 27.5% 57.45 WD 7: Seg 27 284-325 5.64 347.61 0.00129 7.5% 57.65 WD 8: Seg 32 335-388 5.05 323.25 0.00274 15.0% 49.62 WD 9: Seg 39 425-472 4.85 315.20 0.00351 7.5% 27.34Multiple sequence alignment of 9 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 22-58 RD---------------E--------VEKYNRNGVNALQLDPAL---NRLFTAGRDSIIRIW--------S WD 2 59-103 VN---------------QHKQDPYIASMEHHTDWVNDIVLCCNG---KTLISASSDTTVKVW--------N WD 3 107-145 -G---------------F-----CMSTLRTHKDYVKALAYAKDK---ELVASAGLDRQIFLW--------D WD 4 154-196 AS---------------N--NTVTTSSLSGNKDSIYSLAMNQLG---TIIVSGSTEKVLRVW--------D WD 5 200-238 -C---------------A-----KLMKLKGHTDNVKALLLNRDG---TQCLSGSSDGTIRLW--------S WD 6 239-280 LG-------------QQR-----CIATYRVHDEGVWALQVNDAF---THVYSGGRDRKIYCT--------D WD 7 284-325 -P---------------D-----IRVLICEEKAPVLKMELDRSADPPPAIWVATTKSTVNKW--------T WD 8 335-388 SGDYDNDCTNPITPLCTQ-----PDQVIKGGAS-IIQCHILNDK---RHILTKDTNNNVAYW--------D WD 9 425-472 KT---------------G-----MLTITLDESDCFAAWVSAKDA---GFSSPDGSDPKLNLGGLLLQALLE WD40 Template TG---------------E-----CLRTLSGHTSGVTSVSFSPDG---KRLVSGSEDGTIKVW--------D |
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