WDRR: WD40 Repeat Recognition
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| JobID: TID301659503278 Submitted: 2022-08-03 13:07:58 You can bookmark this page for further accessing the result in the future. Results on this server will be retained for 30 days. Job status: [Done] Total run time: 79747111 seconds. [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = CmaCh15G003800 (Len=477) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (CmaCh15G003800, Len=477): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MESPQARKTGLNLPAGMAERPLQLETFSGSFRAISSLSSPSKNSTCSDRFIPCRSSSRLHTFGLIEKGSPVKEGGNEAYS 80
WD40-rpts (__________WD 1__________) (________________WD 2________________)
Query 81 RLLKSELFGSDFGSFSPAGSSQGHGSPMSPSKNMLRFKTDHSAPNSPYSPSLFSQDAAYSSDISTPPKPPRKVPKTPHKV 160
WD40-rpts (______________WD 3_____________)
Query 161 LDAPSLQDDFYLNLVDWSSQNVLAVGLGTCVYLWSASNCKVTKLCDLGPNDGVCSIQWTKEGSYISIGTNLGQVQIWDGS 240
WD40-rpts (______________WD 4_____________)(___________________WD 5__________________)
Query 241 QCKKVRTMGGHQTRTGVLAWNSRILASGSRDRNILQHDLRVASEFVNKLVGHKSEVCGLKWSNDDRELASGGNDNQLLVW 320
WD40-rpts (________________WD 6_______________) (_________________WD 7________________
Query 321 NQHSQQQPVLRLTEHKAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTANGHQLESVDTGSQVCNLAWSKNVNELVSTHG 400
WD40-rpts ) (__________________WD 8__________________) (_________________WD 9________
Query 401 YSQNQIMVWKYPSMGKVATLTGHTMRVLYLAMSPDGQTIVTGAGDETLRFWNIFPSMKTQTPVKDTGLWSLGRTQIR 477
WD40-rpts _________) (_________________WD10________________)
 10 WD40-repeats found in QUERY=CmaCh15G003800 (Len=477): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 1 1-26 3.87 274.34 0.01244 10.0% -6.63 WD 2: Seg 2 29-66 3.00 238.49 0.03738 17.5% -2.36 WD 3: Seg 6 118-150 4.91 317.29 0.00329 12.5% -11.90 WD 4: Seg 7 163-195 4.91 317.47 0.00328 2.5% 43.63 WD 5: Seg 10 196-238 8.08 448.30 5.6e-05 27.5% 53.90 WD 6: Seg 14 242-278 6.75 393.63 0.00031 27.5% 56.04 WD 7: Seg 18 283-321 9.36 501.31 1.1e-05 35.0% 55.02 WD 8: Seg 22 326-367 7.39 419.81 0.00014 25.0% 46.19 WD 9: Seg 26 371-410 5.98 361.85 0.00083 30.0% 51.83 WD10: Seg 30 414-452 10.01 528.23 4.7e-06 37.5% 57.66Multiple sequence alignment of 10 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 1-26 -----------------MESPQARKTGLNLPA---GMAERPLQLET WD 2 29-66 -GSFRAISS---LSSPSKNSTC-SDRFIPCRS---SSRLHTFGLIE WD 3 118-150 -------KT---DHSAPNSPYSPSLFSQDAAY---SSDISTPPKPP WD 4 163-195 -------AP---SLQDDFYLNLVDWSSQNVLA---VGLGTCVYLWS WD 5 196-238 ASNCKVTKLCDLGPNDGVCSIQWTKEGSYISI---GTNLGQVQIWD WD 6 242-278 -CKKVRTMG---GHQTRTGVLAW--NSRILAS---GSRDRNILQHD WD 7 283-321 -SEFVNKLV---GHKSEVCGLKWSNDDRELAS---GGNDNQLLVWN WD 8 326-367 -QQPVLRLT---EHKAAVKAIAWSPHQSSLLASGGGTADRCIRFWN WD 9 371-410 -GHQLESVD---TG-SQVCNLAWSKNVNELVS-THGYSQNQIMVWK WD10 414-452 -MGKVATLT---GHTMRVLYLAMSPDGQTIVT---GAGDETLRFWN WD40 Template TGECLRTLS---GHTSGVTSVSFSPDGKRLVS---GSEDGTIKVWD |
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