Input parameters:

  Query = CsaV3_3G009700 (Len=434)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CsaV3_3G009700, Len=434):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MDFALLIPVVSVILGALIAVIFFGSYFRKRRSEVQTISHPELPSDPKKHQKPSQTKKSHSKPHSHSSEKDQNKKHHPLDL 80  
WD40-rpts                                                                     (________________

Query       81 NTLKGHGDSVTGLCFSSDGSNLATACADGVIRVFKLDDASSKSFKFLRINLPAGGHPTAVMFGDDATSIIVSSQGLSGSS 160 
WD40-rpts      _______WD 1_______________________)        (__________________WD 2______________

Query      161 LYMYGEEKAKPSGETKQQAKLPLPEIKWEQHKVHDKKSVITLVGATASYGSADGSTIVASCSEGTDIRLWHAKTGKLVGD 240 
WD40-rpts      ____)                           (_________________WD 3________________)   (_____

Query      241 VDTNQLKNTMATLSPNGRFIAAAAFTADVKVWEVVYSKDGSVKEVLRVMQLKGHKSAVTWLCFTPNSEQIITASKDGSMR 320 
WD40-rpts      ____________WD 4________________)           (_________________WD 5______________

Query      321 IWNINVRYHLDEDPKTLKVFPIPLHDSKGATVHYDHLNISPDGKILAATHGSTLQWLCVETGKVLDTAEKAHDGDITWIS 400 
WD40-rpts      __)                                              (___________________________WD 

Query      401 WAPKPIPSGVKKVMVLATASVDKKVKLWAAPSLS 434 
WD40-rpts      6___________________________)     

6 WD40-repeats found in QUERY=CsaV3_3G009700 (Len=434):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    64-115      8.91  482.91  1.9e-05       40.0%     46.17
  WD 2:  Seg  5   124-165      5.61  346.32  0.00134       17.5%     44.98
  WD 3:  Seg 10   193-231      7.54  425.96  0.00011       15.0%     50.32
  WD 4:  Seg 14   235-273      9.23  495.97  1.3e-05       20.0%     55.63
  WD 5:  Seg 18   285-323      9.38  502.07  1.1e-05       30.0%     55.32
  WD 6:  Seg 24   370-429      6.64  389.07  0.00036       27.5%     51.97

Multiple sequence alignment of 6 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   64-115    SHSSEKDQNKKHHPLDLN-------TL-----KGHGDSVTGLCFSSDG--------SNLATACA---DGVIRVFK
   WD 2  124-165    -FK------------FLR-------IN-----LPAGGHPTAVMFGDDA--------TSIIVSSQGLSGSSLYMYG
   WD 3  193-231    -VH------------DKK-------SV-----ITLVGATASYGSADGS--------TIVASCSE---GTDIRLWH
   WD 4  235-273    -GK------------LVG-------DV-----DTNQLKNTMATLSPNG--------RFIAAAAF---TADVKVWE
   WD 5  285-323    -VL------------RVM-------QL-----KGHKSAVTWLCFTPNS--------EQIITASK---DGSMRIWN
   WD 6  370-429    HGS------------TLQWLCVETGKVLDTAEKAHDGDITWISWAPKPIPSGVKKVMVLATASV---DKKVKLWA

   WD40 Template    TGE------------CLR-------TL-----SGHTSGVTSVSFSPDG--------KRLVSGSE---DGTIKVWD