Input parameters:

  Query = CmaCh19G008910 (Len=472)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CmaCh19G008910, Len=472):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MKVKVISRSTDEFTRERSQDLQRVFRNFDPSLRTQEKAVEYVRALNAAKMDRMFAKPFIGAMDGHLDAVSCMAKNPNHLK 80  
WD40-rpts                (__________________WD 1__________________)   (__________________WD 2__

Query       81 GIFSGSMDGVNDIRLWDIANRRTVCQFPGHQGAVRGLTASADGRILVSCGTDCTVRLWNIPIPTLNSYVTSNNSSEPLAV 160 
WD40-rpts      ________________)   (_________________WD 3________________)          (__________

Query      161 YAWKNAFWAVDHQWDGNLFATAGAQLDIWDHNRSQPVSSFEWGTDSVISVRFNPGEPNILATSASDRSIALYDLRMSSPA 240 
WD40-rpts      ________WD 4_________________)   (_________________WD 5_________________)   (___

Query      241 RKIIMRTKTNSICWNPREPMNFTAANEDCNCYSYDSRKLDEAKCVHRDHVSAVMDIDFSPSGREFVTGSYDRTIRIFPYN 320 
WD40-rpts      ______________WD 6________________)    (_________________WD 7________________)  

Query      321 GGHSREIYHTKRMQRVFCVRFSCDASYVISGSDDTNLRLWKAKASEQLGVLLPREKRKHEYQEAVKNRYKHLPEVKRIVR 400 
WD40-rpts       (_________________WD 8_________________)   (_________________WD 9______________

Query      401 HRHLPKPIFKAAALRRTIMDAERRKEERRKAHSARGSISTEKRVCCWLRTLSIAPEIFLRPHLITSIDGKVG 472 
WD40-rpts      __)                                                                     

9 WD40-repeats found in QUERY=CmaCh19G008910 (Len=472):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    11-52       5.01  321.71  0.00287       17.5%     31.95
  WD 2:  Seg  6    56-97       7.22  412.70  0.00017       32.5%     53.71
  WD 3:  Seg 10   101-139      9.39  502.73  1.0e-05       30.0%     57.44
  WD 4:  Seg 15   150-190      5.77  352.93  0.00109       15.0%     46.40
  WD 5:  Seg 19   194-233      7.78  436.06  8.3e-05       25.0%     56.02
  WD 6:  Seg 23   237-275      5.46  340.21  0.00162       17.5%     54.03
  WD 7:  Seg 27   280-318      9.33  500.05  1.1e-05       35.0%     52.37
  WD 8:  Seg 31   322-361      7.73  434.11  8.8e-05       27.5%     59.17
  WD 9:  Seg 35   365-403      6.28  374.22  0.00056        7.5%     32.09

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   11-52     -D---EFTRER-SQDLQRVFRNFDPSLRT-QE-K-AVEYVRALN--AAKMDR
   WD 2   56-97     -K---PFIGAM-DGHLDAV---SCMAKNP-NHLK-GIFSGSMDGVNDIRLWD
   WD 3  101-139    -R---RTVCQF-PGHQGAV---RGLTASA-DG-R-ILVSCGTDC--TVRLWN
   WD 4  150-190    TSNNSSEPLAV-YAWKNAF---WAVDHQW-DG-N-LFATAGAQ----LDIWD
   WD 5  194-233    -S---QPVSSF-EWGTDSV---ISVRFNPGEP-N-ILATSASDR--SIALYD
   WD 6  237-275    -S---SPARKI-IMRTK-T---NSICWNP-RE-PMNFTAANEDC--NCYSYD
   WD 7  280-318    -D---EAKCVH-RDHVSAV---MDIDFSP-SG-R-EFVTGSYDR--TIRIFP
   WD 8  322-361    -G---HSREIYHTKRMQRV---FCVRFSC-DA-S-YVISGSDDT--NLRLWK
   WD 9  365-403    -S---EQLGVL-LPREKRK---HEYQEAV-KN-R-YKHLPEVKR--IVRHRH

   WD40 Template    TG---ECLRTL-SGHTSGV---TSVSFSP-DG-K-RLVSGSEDG--TIKVWD