Input parameters:

  Query = CmaCh11G000910 (Len=343)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CmaCh11G000910, Len=343):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MDVAHCTLDGNADAVEFCPHSSFSNVLAASTYTLLEGDRPSRSGCLSIFNVNADDCSLELLHRVDTAGIFDIKWSPVGQT 80  
WD40-rpts      (_________________WD 1_________________)            (____________________WD 2___

Query       81 ISPLLAQADADGCIRVHALEHSSNGAEGQYLKERCGSKISSSMCLCLDWNPSATSISVGHSDGSISLLSAGESRLEVQNQ 160 
WD40-rpts      _________________)            (_________________WD 3________________)(__________

Query      161 WKAHEFELWATSFDPHQPHLVYTGSDDCKFSCWDLRDTPTKAFHNTKAHKMGVCCIAKCLNDPYKLLTGSYDEHLRVWDI 240 
WD40-rpts      __________WD 4___________________)     (_________________WD 5_________________)(

Query      241 RSISKPTNETSICLGGGVWRIKPHPSVFDVVLAACMHNGFAIVRVKDDTAEVVETYDKHSSLAYGADWQRGDSSHEDERK 320 
WD40-rpts      ____________________WD 6___________________)     (______________________WD 7____

Query      321 RYTVATCSFYDRLLRIWIPETDI 343 
WD40-rpts      _________________)     

7 WD40-repeats found in QUERY=CmaCh11G000910 (Len=343):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-40       8.47  464.35  3.4e-05       15.0%     28.45
  WD 2:  Seg  5    53-98       7.56  426.92  0.00011       27.5%     56.44
  WD 3:  Seg  9   111-149      7.25  414.28  0.00016       15.0%     53.96
  WD 4:  Seg 13   150-194      7.66  430.93  9.7e-05       27.5%     53.67
  WD 5:  Seg 17   200-239      7.98  444.49  6.4e-05       27.5%     55.64
  WD 6:  Seg 21   240-284      5.07  324.29  0.00265       10.0%     55.66
  WD 7:  Seg 25   290-338      5.63  347.31  0.00130       17.5%     46.94

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-40     MD----V----A--HCTLDGNADAVEFCPHSS-FS-N---------V-LAAST-YTLLEGDRP
   WD 2   53-98     AD----D----CSLELLHRVDTAGIFDIKWSP-VG-Q-----TISPL-LAQAD-ADGCIRVHA
   WD 3  111-149    -L----K----E--RCGSKISSSMCLCLDWNP-SA-T---------S-ISVGH-SDGSISLLS
   WD 4  150-194    AGESRLE----V--QNQWKAHEFELWATSFDP-HQ-P---------HLVYTGS-DDCKFSCWD
   WD 5  200-239    -T----K----A--FHNTKAHKMGVCCIAKCLNDP-Y---------K-LLTGS-YDEHLRVWD
   WD 6  240-284    IR----SISKPT--NETSICLGGGVWRIKPHP-SVFD---------V-VLAAC-MHNGFAIVR
   WD 7  290-338    -A----E----V--VETYDKHSSLAYGADWQR-GD-SSHEDERKRYT-VATCSFYDRLLRIWI

   WD40 Template    TG----E----C--LRTLSGHTSGVTSVSFSP-DG-K---------R-LVSGS-EDGTIKVWD