Input parameters:

  Query = CmaCh14G018410 (Len=521)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CmaCh14G018410, Len=521):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MNCSISGEIPEEPVVSKNSGLLFEKRLIERHISDYGKCPVTGEPLSIDDMVPIKTGKIVKPRQAASIPGMLGMFQNEWDV 80  
WD40-rpts                                                                                      

Query       81 LVLSNFALEQQLHTARQELSHALYQHDAACRVIARLKKERDEARSLLAQAERQMPLSSTPVSSNAAVSGNGKRVNEDEEL 160 
WD40-rpts                                                                                      

Query      161 GPDGKKIRQGISATFISELTDCNAALSQQRKKRQIPPTLVPVEALESYTQISSHPLHKTSKPGIISLDIHHEKDVIATGG 240 
WD40-rpts                                                            (_______________WD 1______

Query      241 LDTNAVIFDRSSGEILSTLSGHSKKVTSAKFVARDDLFLTGSADKTVRVWQQSDDGNYNCRHILKDHTAEVQAVTVHATN 320 
WD40-rpts      ________)   (_________________WD 2________________)      (_________________WD 3_

Query      321 NFFVTASLDNTWCFYELASGLCLTQVTEASETEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQKNVARFDGHVGPVTAI 400 
WD40-rpts      _______________)(___________________WD 4___________________)   (________________

Query      401 SFSENGYFLATAAHDGVKLWDLRKLKNFRTFSPYDSETPTNSVEFDHSGSYLAIAGSDLRVYQVASVKSEWNCIKTIPDL 480 
WD40-rpts      WD 5________________)   (_________________WD 6________________)       (_________

Query      481 SGTGKATCLKFGPDAKYLAVGSMDRNLRIFGVPGEDGSMEA 521 
WD40-rpts      _________WD 7_________________)          

7 WD40-repeats found in QUERY=CmaCh14G018410 (Len=521):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  4   215-249      6.80  395.73  0.00029       12.5%     48.05
  WD 2:  Seg  7   253-291     10.21  536.22  3.7e-06       45.0%     57.14
  WD 3:  Seg 11   298-336      8.41  461.85  3.7e-05       25.0%     54.85
  WD 4:  Seg 15   337-380      8.77  477.03  2.3e-05       37.5%     54.99
  WD 5:  Seg 19   384-421      8.23  454.61  4.6e-05       35.0%     48.89
  WD 6:  Seg 23   425-463      5.25  331.48  0.00212       27.5%     51.71
  WD 7:  Seg 27   471-511      7.49  424.22  0.00012       30.0%     54.84

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  215-249    ---------PLHK--TSKP--GIISLDIHHEKDVIATGGLDTNAVIFD
   WD 2  253-291    -GEIL----STLS--GHSK--KVTSAKFVARDDLFLTGSADKTVRVWQ
   WD 3  298-336    -YNCR----HILK--DHTA--EVQAVTVHATNNFFVTASLDNTWCFYE
   WD 4  337-380    LASGLCLTQVTEA--SETE--GYTSAAFHPDGLILGTGTSEALVKIWD
   WD 5  384-421    -QKNV----ARFD--GHVG--PVTAISFSENGYFLATAAHDG-VKLWD
   WD 6  425-463    -LKNF----RTFS--PYDSETPTNSVEFDHSGSYLAIAGSD--LRVYQ
   WD 7  471-511    -WNCI----KTIPDLSGTG--KATCLKFGPDAKYLAVGSMDRNLRIFG

   WD40 Template    TGECL----RTLS--GHTS--GVTSVSFSPDGKRLVSGSEDGTIKVWD