Input parameters:

  Query = sp_P61962_DCAF7_HUMAN (Len=342)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (sp_P61962_DCAF7_HUMAN, Len=342):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSLHGKRKEIYKYEAPWTVYAMNWSVRPDKRFRLALGSFVEEYNNKVQLVGLDEESSEFICRNTFDHPYPTTKLMWIPDT 80  
WD40-rpts                                                           (____________________WD 1__

Query       81 KGVYPDLLATSGDYLRVWRVGETETRLECLLNNNKNSDFCAPLTSFDWNEVDPYLLGTSSIDTTCTIWGLETGQVLGRVN 160 
WD40-rpts      __________________)            (________________WD 2________________)           

Query      161 LVSGHVKTQLIAHDKEVYDIAFSRAGGGRDMFASVGADGSVRMFDLRHLEHSTIIYEDPQHHPLLRLCWNKQDPNYLATM 240 
WD40-rpts         (__________________WD 3__________________)     (__________________WD 4_______

Query      241 AMDGMEVVILDVRVPCTPVARLNNHRACVNGIAWAPHSSCHICTAADDHQALIWDIQQMPRAIEDPILAYTAEGEINNVQ 320 
WD40-rpts      __________)    (_________________WD 5_________________)(____________________WD 6

Query      321 WASTQPDWIAICYNNCLEILRV 342 
WD40-rpts      ____________________) 

6 WD40-repeats found in QUERY=sp_P61962_DCAF7_HUMAN (Len=342):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  5    54-99       5.13  326.56  0.00247       20.0%     36.79
  WD 2:  Seg 10   112-149      6.24  372.49  0.00059       22.5%     45.77
  WD 3:  Seg 14   164-205      7.18  411.15  0.00018       27.5%     53.94
  WD 4:  Seg 18   211-251      4.25  290.04  0.00766       12.5%     58.44
  WD 5:  Seg 22   256-295      7.35  418.14  0.00014       17.5%     53.59
  WD 6:  Seg 26   296-341      5.65  348.12  0.00127        5.0%     43.42

Multiple sequence alignment of 6 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   54-99     EESSEFICR------NTFDHPYPTTKLMWIP-DTK---GVYPDLLATSGDY-LRVWR
   WD 2  112-149    NNN------------KNSDFCAPLTSFDWNEVDPY---LLGT---SSIDTT-CTIWG
   WD 3  164-205    -GH---VKT------QLIAHDKEVYDIAFSR-AGGGRDMFAS---VGADGS-VRMFD
   WD 4  211-251    -HS---TII------YEDPQHHPLLRLCWNKQDPN---YLAT---MAMDGMEVVILD
   WD 5  256-295    -CT---PVA------RLNNHRACVNGIAWAP-HSS--CHICT---AADDHQ-ALIWD
   WD 6  296-341    IQQ---MPRAIEDPILAYTAEGEINNVQWAS-TQP---DWIA---ICYNNC-LEILR

   WD40 Template    TGE---CLR------TLSGHTSGVTSVSFSP-DGK---RLVS---GSEDGT-IKVWD