Input parameters:

  Query = thoc6_isoA_Dmel (Len=350)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (thoc6_isoA_Dmel, Len=350):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MKQKDLKRAYNNVLAQAISGSKQYLFAGNLFGDIFVLRIKELDKGSEEPPGKLKIFPQGSDVDINYLAFHRDFLIVGAVG 80  
WD40-rpts      (________________WD 1________________)                               (__________

Query       81 LIYGLEWNEEEESLATKRSWEVKIPMQVDAVEVPDVNSMWLDSENSILFAGCGDGVIYQVSLEDGRIQREYRGHTDYVHS 160 
WD40-rpts      ___WD 2_____________)(_________________WD 3_________________)   (_______________

Query      161 VVGNANGQIFSGAEDGTVRVWSTKQQQHTSMLEPYKNPNLLRPDWGKWIGAVAVNEDWLLCGGGPKASIFHLRSMESTCV 240 
WD40-rpts      _WD 4________________)   (______________________WD 5_____________________)  (___

Query      241 FSFPGRVHLCDFVDDCVLIGGEHNHVQSYTLNGVLQANIPVEHTACYSAVWQTSPIKFISIAGFSNKLHILKDFRFLDSK 320 
WD40-rpts      ___________WD 6______________) (__________________WD 7__________________)       

Query      321 IEMYGNVEGEENDPEEEDELIEKPLTVEAA 350 
WD40-rpts                                    

7 WD40-repeats found in QUERY=thoc6_isoA_Dmel (Len=350):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-38       7.92  442.02  6.9e-05       20.0%     48.92
  WD 2:  Seg  6    70-101      3.07  241.30  0.03432       10.0%     30.26
  WD 3:  Seg  9   102-141      7.51  424.84  0.00012       17.5%     51.41
  WD 4:  Seg 13   145-182      9.06  488.73  1.6e-05       42.5%     54.45
  WD 5:  Seg 17   186-234      5.90  358.37  0.00092       10.0%     31.37
  WD 6:  Seg 21   237-270      3.32  251.73  0.02494       12.5%     33.82
  WD 7:  Seg 25   272-313      7.15  409.99  0.00019       12.5%     42.17

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-38     MKQ--KDLKRAYNN----------VLAQAIS--GSKQYLFAGNLFGDIFVLR
   WD 2   70-101    HRDFL--IVGAVGL----------IYGLEWN--EE------EESLATKRSWE
   WD 3  102-141    VKIPMQVDAVEVPD----------VNSMWLD--SENSILFAGCGDGVIYQVS
   WD 4  145-182    -GRIQREYRGHTDY----------VHSVVGN--ANGQ-IFSGAEDGTVRVWS
   WD 5  186-234    -QQHTSMLEPYKNPNLLRPDWGKWIGAVAVN--EDWLLCGGGPKASIFHLRS
   WD 6  237-270    -STCVFSFPGRVHL----------CDFV-------DDCVLIGGEHNHVQSYT
   WD 7  272-313    NGVLQANIPVEHTA----------CYSAVWQTSPIKFISIAGFSNKLHILKD

   WD40 Template    TGECLRTLSGHTSG----------VTSVSFS--PDGKRLVSGSEDGTIKVWD