Input parameters:

  Query = CmaCh15G013580 (Len=459)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CmaCh15G013580, Len=459):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MEFTDSYKQTGPCCFSPNSRFIAVAVDYRLVVRDTLSFKVVHLFSCLDKISYIEWALDSEYILCGLYKRPMIQAWSLTQP 80  
WD40-rpts      (______________WD 1______________)(__________________WD 2__________________)   (

Query       81 EWTCKIDDGPAGIAYARWSPDSRHILTTSDFQLRLTVWSLVNTACVHVQWPKHTSKGVSFTQDGKFAAVCTRKDCKDYVN 160 
WD40-rpts      _________________WD 3_________________)  (_________________WD 4________________)

Query      161 LISCHTWEIMGVFAVDTLDLADIEWSPDDSSIVVWDSPLEYKVLIYSPDGRCLFKYQAYESGLGVKSVSWSPCGQFLAVG 240 
WD40-rpts            (_________________WD 5________________)    (__________________WD 6________

Query      241 SYDQMLRVLNRLTWKTFAEFIHVSTVRGPSCTAIFKEVDEPLQLNMSELCLSDEFIQGNSEDSTEGHFRVRYEVTEMPVT 320 
WD40-rpts      _________)                 (__________________WD 7__________________)           

Query      321 LPFQKPLVDKPNPKQGIGLMLWSKDSQYICTRNDSMPTALWIWDIHHLELAAILVQKDPIRAAAWDPTCTRLSLCTGSPH 400 
WD40-rpts         (__________________WD 8_________________)(__________________WD 9_____________

Query      401 LYMWTPAGAYCVNIPLSEFAITDLKWNSDGSCLLLKDKESFCCAAVPVLPESSDYSSDE 459 
WD40-rpts      ____)  (_________________WD10________________)             

10 WD40-repeats found in QUERY=CmaCh15G013580 (Len=459):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-34       5.19  329.17  0.00228       15.0%     45.73
  WD 2:  Seg  5    35-76       5.13  326.64  0.00246       15.0%     55.88
  WD 3:  Seg  9    80-119      7.20  412.11  0.00017       20.0%     59.17
  WD 4:  Seg 13   122-160      5.98  361.48  0.00084       15.0%     49.15
  WD 5:  Seg 17   167-205      7.43  421.43  0.00013       20.0%     56.84
  WD 6:  Seg 21   210-250      8.34  459.14  4.0e-05       42.5%     58.39
  WD 7:  Seg 26   268-309      6.33  376.27  0.00053       12.5%     39.72
  WD 8:  Seg 30   324-364      6.67  390.06  0.00034       15.0%     43.43
  WD 9:  Seg 33   365-405      7.19  411.86  0.00018       12.5%     56.80
  WD10:  Seg 37   408-446      6.66  389.82  0.00035       12.5%     54.67

Multiple sequence alignment of 10 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-34     -------MEFTDSYKQ--TGPCCFSPNSRFIAVAV----DYR-LVVRD
   WD 2   35-76     TLSF-KVVHLFSCLDK--ISYIEWALDSEYILCGLYK--RPM-IQAWS
   WD 3   80-119    -PEW--TCKIDDGPAG--IAYARWSPDSRHILTTS-D--FQLRLTVWS
   WD 4  122-160    -NTA--CVHVQWPKHT--SKGVSFTQDGKFAAVCT-R--KDC-KDYVN
   WD 5  167-205    -WEI--MGVFAVDTLD--LADIEWSPDDSSIVVWD-S--PLE-YKVLI
   WD 6  210-250    -GRC--LFKYQAYESGLGVKSVSWSPCGQFLAVGS-Y--DQM-LRVLN
   WD 7  268-309    GPSCTAIFKEVDEPLQ--LNMSELCLSDEFIQGNS-E--DST-EGHFR
   WD 8  324-364    -QKP--LVDKPNPKQG--IGLMLWSKDSQYICTRN-DSMPTA-LWIWD
   WD 9  365-405    IHHL-ELAAILVQKDP--IRAAAWDPTCTRLSLCT-G--SPH-LYMWT
   WD10  408-446    -GAY--CVNIPLSEFA--ITDLKWNSDGSCLLLKD-K--ESF-CCAAV

   WD40 Template    TGEC--LRTLSGHTSG--VTSVSFSPDGKRLVSGS-E--DGT-IKVWD