Input parameters:

  Query = CmaCh06G011360 (Len=436)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CmaCh06G011360, Len=436):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MDSALLIPVISVILGALIAVIFFRNYFSKRRSEVQTISHPELPSDPKKHQKPLQTKKSHYKSHSHSHSSDKDQNKKHHPL 80  
WD40-rpts                                                                       (______________

Query       81 DLNTLKGHGDSVTGLCFSSDGSSLATACGDGMIRVFKLDDASSKSFKFLRINVPAGGHPTAVTFGDDASSVIISSQGLSG 160 
WD40-rpts      _________WD 1_______________________)        (__________________WD 2____________

Query      161 SSLYMYGEEKAKASDETKQQTKLPLPEIKWENHKVHDKKSVLTLVGATASYGSADGSTIVASCSEGTDIRLWHAKTGKLL 240 
WD40-rpts      ______)      (___________________________WD 3___________________________)   (___

Query      241 GDVDTNQLKNTMATLSPNGRFIAAAAFTADVKVWEVVYSKDGSVKEVLRVMQLKGHKSAVTWLCFTPNSEQIITASKDGS 320 
WD40-rpts      ______________WD 4________________)           (_________________WD 5____________

Query      321 MRIWNINVRYHLDEDPKTLKVFPIPLHDSNGATLYYDRLNISPDGKILAVTHGSTLQWLCVETGKVLDTAEKAHDGDITW 400 
WD40-rpts      ____)                 (________________WD 6________________)   (________________

Query      401 ISWAPKPIPSGGKRVLVLATASVDKKVKLWAAPSLS 436 
WD40-rpts      _____WD 7_____________________)     

7 WD40-repeats found in QUERY=CmaCh06G011360 (Len=436):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    66-117      9.07  489.44  1.6e-05       40.0%     50.74
  WD 2:  Seg  5   126-167      6.32  375.82  0.00054       17.5%     40.38
  WD 3:  Seg 10   174-233      6.96  402.26  0.00024       17.5%     47.65
  WD 4:  Seg 14   237-275      9.40  502.79  1.0e-05       22.5%     56.45
  WD 5:  Seg 18   287-325      9.57  509.85  8.4e-06       30.0%     54.60
  WD 6:  Seg 22   343-380      5.74  351.57  0.00114       25.0%     43.66
  WD 7:  Seg 25   384-431      6.76  393.78  0.00031       30.0%     53.50

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   66-117    SHSSDKDQNKKHHPLD--------------------LNTL-KGHGDSVTGLCFSSDG--------SSLAT---ACGDGMIRVFK
   WD 2  126-167    -FK------------F--------------------LRIN-VPAGGHPTAVTFGDDA--------SSVIISSQGLSGSSLYMYG
   WD 3  174-233    SDE------------TKQQTKLPLPEIKWENHKVHDKKSV-LTLVGATASYGSADGS--------TIVAS---CSEGTDIRLWH
   WD 4  237-275    -GK------------L--------------------LGDV-DTNQLKNTMATLSPNG--------RFIAA---AAFTADVKVWE
   WD 5  287-325    -VL------------R--------------------VMQL-KGHKSAVTWLCFTPNS--------EQIIT---ASKDGSMRIWN
   WD 6  343-380    -PI------------P--------------------LHDS-NGATLYYDRLNISPDG--------KILAV---TH-GSTLQWLC
   WD 7  384-431    -GK------------V--------------------LDTAEKAHDGDITWISWAPKPIPSGGKRVLVLAT---ASVDKKVKLWA

   WD40 Template    TGE------------C--------------------LRTL-SGHTSGVTSVSFSPDG--------KRLVS---GSEDGTIKVWD