Input parameters:

  Query = CmaCh14G019450 (Len=423)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CmaCh14G019450, Len=423):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MEKGDKEIRGKTNERLVNEEYKIWKKNTPFLYDLIITHALEWPSLTVEWLPDRDEPPGKDYSVQKMILGTHSFDNKPNYL 80  
WD40-rpts                                                                            (_________

Query       81 MLAQVQLPLESSENDARHYRDDRASGGGFGCANGKVQIIQHINHDGEVNRARYMPQNPFIIATKTVSAEVFVFDYSKHPS 160 
WD40-rpts      ________WD 1_________________)___________________WD 2____________________)(_____

Query      161 IPPLDGKCNPDLRLRGHKSEGYGLSWSKFKQGHLLSGSEDSHICLWDINATPDNKTLEAMQIFKGHEGVVGDIAWHMRHE 240 
WD40-rpts      ___________________WD 3_______________________)         (_________________WD 4__

Query      241 YLFGSVGEDRYLHVWDLRSPSANKPVQSVVAHQSEVICLTFNPFNEWLVATGSTDKMVKLFDLRNISSSLHTFDCHKEEV 320 
WD40-rpts      _______________)      (_________________WD 5_________________)    (_____________

Query      321 FQVGWHPKNEMILASCCRGRRLMVWDLSRIEEEQTPEDVEDGPPELLFIHGGHTNIISDFSWNPCEEWVVASVAEDNILQ 400 
WD40-rpts      ____WD 6_________________)(__________________________WD 7_______________________

Query      401 VWQMAENVYYGEDDLLEEPPKLS 423 
WD40-rpts      __)                    

7 WD40-repeats found in QUERY=CmaCh14G019450 (Len=423):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3    71-110      3.28  249.96  0.02633        5.0%     -20.24
  WD 2:  Seg  4   109-154      4.95  319.08  0.00312       15.0%     54.07
  WD 3:  Seg  8   155-207      6.38  378.35  0.00050       37.5%     54.00
  WD 4:  Seg 12   217-256      6.61  387.74  0.00037       27.5%     56.00
  WD 5:  Seg 16   263-302      7.16  410.62  0.00018       25.0%     54.41
  WD 6:  Seg 20   307-346      7.24  413.88  0.00016       27.5%     50.09
  WD 7:  Seg 24   347-403      5.96  360.88  0.00085       30.0%     55.84

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   71-110    HS----------------FD-----NKPNYLMLAQVQLPLESSEND-A-R-HYRDDRASGGGFG
   WD 2  109-154    FG----------------CANGKVQIIQHINHDGEVNRARYMPQNPFI-I-ATKTVSAEVFVFD
   WD 3  155-207    YS----KHPSIPPLDGKCNP-----DLRLRGHKSEGYGLSWSKFKQGH-L-LSGSEDSHICLWD
   WD 4  217-256    -L----------------EA-----MQIFKGHEGVVGDIAWHMRHE-Y-LFGSVGEDRYLHVWD
   WD 5  263-302    -N----------------KP-----VQSVVAHQSEVICLTFNPFNEWL-V-ATGSTDKMVKLFD
   WD 6  307-346    -S----------------SS-----LHTFDCHKEEVFQVGWHPKNE-MIL-ASCCRGRRLMVWD
   WD 7  347-403    LSRIEEEQTPEDVEDGPPEL-----LFIHGGHTNIISDFSWNPCEEWV-V-ASVAEDNILQVWQ

   WD40 Template    TG----------------EC-----LRTLSGHTSGVTSVSFSPDGK-R-L-VSGSEDGTIKVWD