Input parameters:

  Query = CmaCh04G018760 (Len=630)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CmaCh04G018760, Len=630):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MEAPEPSNSRKYGVPFYAAAWVPSISLKSEQESLESEIDRDQSGDGDGDVSADDKTLPSHPTTAVNYYVAAAGGGGEGRS 80  
WD40-rpts       (_________________WD 1________________)   (_________________WD 2_______________

Query       81 GISNALILAHFDFESRSLSDQPVNSPSLSLSSSMIIFRVRVFLYRLQNMELVLICLTEWLFIQLEMELFVLFQKVAVQDG 160 
WD40-rpts      _)  (_________________WD 3________________)  (__________________WD 4____________

Query      161 NLRVFKWPSLDIILNEPNAHSTVKDLDFSPDGKYLVSLGGPCRVWDVTSSTVVTALPKGNDEVFVSCRFSLANNGNMVLY 240 
WD40-rpts      _____)   (________________WD 5_______________)(______________________WD 6_______

Query      241 TATVTGKGGAIVTWDATTWRRVASKLITRDNITAFNVSANGKLLACGTTQGDVLIINSTSMRVQKIVKKAHIGFVTAMSF 320 
WD40-rpts      ______________)   (_________________WD 7________________)(___________________WD 

Query      321 FHDSRALVSASMDSSVRVTLIEEEQKNGMNLWVIIFILLIAVAAYLIKNDIGMQCNYAMKGSRTTMESENLPILRICVVK 400 
WD40-rpts      8__________________)                                                            

Query      401 FLIQSAHDLEVAPIVKYSALSLFADRFYPSLSGITSRNASRNWLLQPITESNLQLFALVSLWISSKLHTSHPLSVKLLKS 480 
WD40-rpts                                                                                      

Query      481 FGDKMIKEQHFMTRDLLDAEVIFMQILKFEIGTANITFVFLEELLIQFNLPLPGTNFREVAKVGELVNWEACMDVMDLLY 560 
WD40-rpts                                                                                      

Query      561 EKEETSVSYSSPRSLAAAILVASYLITVPVQEWEFPVIPWVQFVMPFIEEDIVEQVRDILLQVLETETDC 630 
WD40-rpts                                                                            

8 WD40-repeats found in QUERY=CmaCh04G018760 (Len=630):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     2-40       5.85  356.15  0.00099       10.0%     10.74
  WD 2:  Seg  2    44-82       6.37  377.68  0.00051       10.0%     38.04
  WD 3:  Seg  5    85-123      7.05  405.92  0.00021       10.0%     25.65
  WD 4:  Seg  8   126-166      7.39  420.13  0.00014       12.5%     50.05
  WD 5:  Seg 12   170-206      7.47  423.21  0.00012       35.0%     50.05
  WD 6:  Seg 16   207-255      4.96  319.64  0.00306       22.5%     48.22
  WD 7:  Seg 20   259-297      8.90  482.39  2.0e-05       17.5%     55.93
  WD 8:  Seg 24   298-340      8.47  464.70  3.4e-05       30.0%     52.37

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    2-40     EAP---EPSNSRKYGVP-FYAAAWV--P-SISLKS----EQESLESEIDR
   WD 2   44-82     -GD---GDGDVSADDKT-LPSHPTT--AVNYYVAA----AGGGGEGRSGI
   WD 3   85-123    -AL---ILAHFDFESRS-LSDQPVN--SPSLSLSS----SMIIFRVRVFL
   WD 4  126-166    LQN---MELVLICLTEWLFIQLEME--LFVLFQKV----AVQDGNLRVFK
   WD 5  170-206    -LD---IILNEPNAHST-VKDLDFS--PDGKYLVS----LGGP--CRVWD
   WD 6  207-255    VTSSTVVTALPKGNDEV-FVSCRFSLANNGNMVLYTATVTGKGGAIVTWD
   WD 7  259-297    -WR---RVASKLITRDN-ITAFNVS--ANGKLLAC----GTTQGDVLIIN
   WD 8  298-340    STSMRVQKIVKKAHIGF-VTAMSFF--HDSRALVS----ASMDSSVRVTL

   WD40 Template    TGE---CLRTLSGHTSG-VTSVSFS--PDGKRLVS----GSEDGTIKVWD