Input parameters:

  Query = CmaCh15G010170 (Len=722)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CmaCh15G010170, Len=722):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MGSFSDDEECPYFDAQEINAPSISEFNCDGIEAAIDTHPRFKNWVDGSLVYDVWNQSPKSVHERRRKFLKWMELGLDQTL 80  
WD40-rpts                       (_________________WD 1_________________)                       

Query       81 PCNGNSLTLWSDWREGDGGRLRDNSGAESSDFEDVFCSGRSSMSCWSSDDLERSEITSMNTIMYMDDGVYGESSTKNGDR 160 
WD40-rpts                                                                                      

Query      161 NNSVRFAMAEEFEELEETSSSSPSFQQMMRMEAERANIPLHTEQRVNKRWLKKLRSAACIFDKSTGLVVDDDDDDDDSAA 240 
WD40-rpts                                                          (_________________WD 2______

Query      241 GSRVRRVKVRQCKKQLKELSALYMGQDIKAHEGAILTMKFSPNGQYLATGGDDGIVKLWQVIEDERSNESDIPEIDPSCI 320 
WD40-rpts      __________)          (_________________WD 3________________)   (________________

Query      321 YFTVNRLSELRPLLVEKEKMANAMTLRKTSESACIIFPPKVFRILERPLHEFHGHTGEILDLSWSKTNYLLSSSVDKTVR 400 
WD40-rpts      _________WD 4________________________)       (________________WD 5______________

Query      401 LWRLGSNDCVRVFSHSNYVTCVHFNPMDENYFISGSIDGKIRIWGIPCSQVVDWIDMREIVTAVSYHPDGQGGIVGSING 480 
WD40-rpts      __)(__________________WD 6__________________)  (_________________WD 7___________

Query      481 TCRFFKVIGDNNLELDAKLCLSSKKKSPSKKITGFQYSAEDSSRIMVSSADSRIRIIEGLNVIQKYKGPCNTGNQMSASF 560 
WD40-rpts      _____)            (_________________WD 8_________________)   (_________________W

Query      561 TSDGKHIISASGDSNVYVWNCNYKNESVISPVKKIKSYEYFSSNGTIAVPWCGSRCNTEESHFSGMRRSSSETFQLPSPA 640 
WD40-rpts      D 9________________)(__________________WD10_________________)     (_____________

Query      641 FFSLSQELVESFPKGSATWPEEKLPTSSLPTKPSMMHKSRYKFLKLSCQNTSSSHAWGLVIVTAGSDGRIRSFHNYGLPV 720 
WD40-rpts      _WD11______________)               (_________________WD12________________)      

Query      721 PV 722 
WD40-rpts        

12 WD40-repeats found in QUERY=CmaCh15G010170 (Len=722):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    18-57       4.00  280.00  0.01045       15.0%     -1.88
  WD 2:  Seg  5   213-251      5.48  341.23  0.00157       17.5%     48.00
  WD 3:  Seg  9   262-300      9.10  490.37  1.5e-05       27.5%     49.96
  WD 4:  Seg 13   304-358      3.63  264.74  0.01672        5.0%     41.50
  WD 5:  Seg 17   366-403      7.56  426.91  0.00011       30.0%     51.11
  WD 6:  Seg 21   404-445      7.73  434.02  8.8e-05       37.5%     54.41
  WD 7:  Seg 25   448-486      7.65  430.61  9.8e-05       27.5%     53.34
  WD 8:  Seg 29   499-538      6.06  365.07  0.00075       17.5%     48.47
  WD 9:  Seg 32   542-580      8.88  481.42  2.0e-05       30.0%     58.88
  WD10:  Seg 36   581-621      6.17  369.66  0.00065       12.5%     47.69
  WD11:  Seg 40   627-660      3.98  279.25  0.01069       22.5%     24.64
  WD12:  Seg 42   676-714      4.91  317.52  0.00327       20.0%     33.70

Multiple sequence alignment of 12 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   18-57     -I-N-APSISEFNCDGIEAAIDTHP-RF----------------KNWVDGSLVYDVWNQS
   WD 2  213-251    KL-R-SAACI-FDKSTG-LVVDDDD-DD----------------DDSAAGSRVRRVKVRQ
   WD 3  262-300    -L-Y-MGQDIKAHEGAI-LTMKFSP-NG----------------QYLATGGDDGIVKLWQ
   WD 4  304-358    -D-E-RSNESDIPEIDP-SCIYFTV-NRLSELRPLLVEKEKMANAMTLRKTSESACIIFP
   WD 5  366-403    -E-R-PLHEFHGHTGEI-LDLSWSK-TN-----------------YLLSSSVDKTVRLWR
   WD 6  404-445    LG-SNDCVRVFSHSNYV-TCVHFNPMDE----------------NYFISGSIDGKIRIWG
   WD 7  448-486    -C-S-QVVDWIDMREIV-TAVSYHP-DG----------------QGGIVGSINGTCRFFK
   WD 8  499-538    -L-C-LSSKKKSPSKKI-TGFQYSAEDS----------------SRIMVSSADSRIRIIE
   WD 9  542-580    -V-I-QKYKGPCNTGNQ-MSASFTS-DG----------------KHIISASGDSNVYVWN
   WD10  581-621    CNYK-NESVISPVKKIK-SYEYFSS-NG----------------TIAVPWCGSRCNTEES
   WD11  627-660    -------RRSSSETFQL-PSPAFFS-LS----------------QELVE-SFPKGSATWP
   WD12  676-714    -M-H-KSRYKFLKLSCQ-NTSSSHA-WG----------------LVIVTAGSDGRIRSFH

   WD40 Template    TG-E-CLRTLSGHTSGV-TSVSFSP-DG----------------KRLVSGSEDGTIKVWD