WDRR: WD40 Repeat Recognition
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| JobID: STOS11659519134 Submitted: 2022-08-03 17:32:14 You can bookmark this page for further accessing the result in the future. Results on this server will be retained for 30 days. Job status: [Done] Total run time: 79730912 seconds. [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = CsaV3_6G000150 (Len=1652) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (CsaV3_6G000150, Len=1652): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MEEQTRFCYECLKSRIKFDFSDRLIVSYAVCDSAFPFTSTAVVQATNGETSGSQFMIVYLPAHDHNCITNYVNEYLLDNV 80
WD40-rpts
Query 81 NSLSEESFHTMSPVSADQEDSIRAGSLHLSQIGEKSATESPNYNHSSRLSCSRIISSLAPVARVCVSSPSIFEEVASNLL 160
WD40-rpts
Query 161 SGSLEDHVLHSLCLLIEGRASGRDSVNFLSLLGIPFFQENVFQNCLRHPNVVPVLSMLRTSGYTNAILPSTPYTLENILH 240
WD40-rpts
Query 241 YSPDALKSEWHIRFLLYQLLSALAFIHGLGIFHGKICPSNVMLNDMCWSWLHICDMPGLVCDLNRKENNCSMTTSEQINC 320
WD40-rpts
Query 321 YAKDCSSKALYADFKLSSSIDWPSDFFRWWRGELSNFEYLLALNRLAGRRWDDHKFHTIMPWVIDFSTKPDESSDVGWRD 400
WD40-rpts
Query 401 LSKSKWRLAKGDEQLDFTYIASEIPHHVSDECLSELAVCSYKARRLPLSILRMAVRSVYEPNEYPSNMQRLYQWTPDECI 480
WD40-rpts
Query 481 PEFYCDSQIFYSMHDGMADLAVPPWAGSPEEFIKLHRDALESDRVSAKLHEWIDIAFGYKMSGEAAIDAKNVMLPLSEPT 560
WD40-rpts
Query 561 VPRSMGRRQLFSRPHPKRQVLTKRSCQSPVISVVNRGHASEMEDKNSIMSEIMYLEELEVASSFLEEGRHLSALYGYFAK 640
WD40-rpts
Query 641 KPEDMSSKELSSAKSFNRCLSNSSDIFAQHEQRTNITLNYLLEHVEVESKDSIGYQELLSWKEKMFHLQFSDGVASDIFS 720
WD40-rpts
Query 721 IGCILAELHLKKPLFHSTSLAMYLESGILPGFIQELPPDIKILVEACIQKDLTRRPSAKNILESPYFPATIKSCYLFLAP 800
WD40-rpts
Query 801 LQLLAKDATRLRYVANFAKQGALKAMGDFAAEMCAPYCMPLILTPQTDDEVEWAYVLLKEFLKCLMPKAVKTLVLPGIQK 880
WD40-rpts
Query 881 ILQVTGYSHLKVSLLQDSFVREIWNRVGKQVYMETIHPLVISNLSVAPHKSSAAAASVLLIGSCEELGMPVTINQTILPL 960
WD40-rpts
Query 961 INCFGKGICADGMDALVRIGGLFGDTFIIKQMLPLLKNVVRCCIKFSSVSKPEPMQSWSSLALIDCFTTLDGLVAYLPGE 1040
WD40-rpts
Query 1041 VVLNELIEGQKCLHVMVLIQKNLDVSVLQVAASSLMTICQLIGSDMTALHLIPQLREVFDELAFSQEAAYRSTSIGRNMK 1120
WD40-rpts
Query 1121 SSKPSIDGDVLNERRMDLVLILYPTFASILGIEKLRQCCTTWLLLEQYLLRYHNWKWECTGMSSRCSSEKLISKRNEFSK 1200
WD40-rpts (_____
Query 1201 SSTSEYSPAKLLLNGVGWSIPQSQRAQGAKNLMPLRHDVHGGSMQMHASTSHSIKAEPWFWFPSIASCWDGPDFLGRAVG 1280
WD40-rpts __________________WD 1______________________) (_________________WD 2__________
Query 1281 LKEEHPWKIKASVIYSVRAHQGAVRSLAICPDEFNVFTAGIGSGFKGMVQRWELSTVNCVSGYYGHEEVVNDICVLSPTG 1360
WD40-rpts _______) (___________________WD 3__________________) (________________WD 4___
Query 1361 RIASCDGTIHVWNSRSGKLISVFAESSVDSAHLASPLSSVLKPNMDHVNLISSNSLSSGILTSAFDGSLYTYMHHLEFAE 1440
WD40-rpts ____________)(_________________WD 5_________________) (_________________WD 6__
Query 1441 KLVVGTGNGSLRFIDVAQGQKLHLWRGDGVESGFPSLVSAIGSCGFDKMVADGASAMPTWIAAGLSSGYCRLFDVRSGNV 1520
WD40-rpts ______________) (_________________________WD 7_________________________) (__
Query 1521 IATWRAHDGYVTKLAAPEEHMLVSSSLDRTLRIWDLRRLSPSKPIIFRGHNDGVSSFSMWGQDVISISRNKIGLSSLTKS 1600
WD40-rpts ______________WD 8________________) (________________WD 9_______________)(__
Query 1601 ADEDGQYRVIPQNLASNDQGTRNLSVLSSISILRYSRLFIVGTEDGYMKICS 1652
WD40-rpts _______________________WD10________________________)
 10 WD40-repeats found in QUERY=CsaV3_6G000150 (Len=1652): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 17 1195-1245 2.81 230.81 0.04721 15.0% -0.74 WD 2: Seg 20 1249-1288 5.13 326.44 0.00248 12.5% 38.23 WD 3: Seg 23 1291-1333 7.56 427.03 0.00011 17.5% 52.16 WD 4: Seg 27 1337-1373 6.06 365.16 0.00075 30.0% 51.83 WD 5: Seg 31 1374-1413 6.18 369.78 0.00065 10.0% 45.42 WD 6: Seg 35 1417-1455 7.51 424.78 0.00012 20.0% 53.55 WD 7: Seg 39 1459-1514 5.02 321.83 0.00286 17.5% 42.47 WD 8: Seg 42 1518-1555 8.14 451.08 5.2e-05 35.0% 54.74 WD 9: Seg 46 1561-1597 4.38 295.59 0.00645 25.0% 39.59 WD10: Seg 50 1598-1652 6.21 371.26 0.00062 22.5% 43.47Multiple sequence alignment of 10 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 1195-1245 RNE---------------FSKSSTSEYSPAKLLLNGVGWSI-----------------PQSQRAQGAK-NLMPL----RHDVHGGSMQ WD 2 1249-1288 -ST---------------SHSI-----------KAEPWFWF-----------------PSIASCWDGPDFLGRA----VGLKEEHPWK WD 3 1291-1333 -AS---------------VIYS-----------VRAHQGAV-----------------RSLAICPDEF-NVFTAGIGSGFKGMVQRWE WD 4 1337-1373 -VN---------------CVSG-----------YYGHEEVV-----------------NDICVLSPTG-R--IA----SCDGTIHVWN WD 5 1374-1413 SRS---------------GKLI-----------SVFAESSV-----------------DSAHLASPLS-SVLKP----NMDHVNLISS WD 6 1417-1455 -SS---------------GILT-----------SAFDGSLY-----------------TYMHHLEFAE-KLVVG----TGNGSLRFID WD 7 1459-1514 -GQ---------------KLHL-----------WRGDGVESGFPSLVSAIGSCGFDKMVADGASAMPT-WIAAG----LSSGYCRLFD WD 8 1518-1555 -GN---------------VIAT-----------WRAHDGYV-----------------TKLA-APEEH-MLVSS----SLDRTLRIWD WD 9 1561-1597 -PS---------------KPII-----------FRGHNDGV-----------------SS--FSMWGQ-DVISI----SRNKIGLSSL WD10 1598-1652 TKSADEDGQYRVIPQNLASNDQ-----------GTRNLSVL-----------------SSISILRYSR-LFIVG----TEDGYMKICS WD40 Template TGE---------------CLRT-----------LSGHTSGV-----------------TSVSFSPDGK-RLVSG----SEDGTIKVWD |
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