Input parameters:

  Query = CsaV3_7G001260 (Len=480)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CsaV3_7G001260, Len=480):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MNKRARIDDSNKAVVNVWKREVGELSTRNFAHRLGALEDLVLRLDLYKKLERHKGCVNTVSFNAAGDILVSGSDDRRVIL 80  
WD40-rpts      (_________________WD 1________________)    (_________________WD 2_______________

Query       81 WNWETGRVKLSFQSGHNNNVFQAKIMPYTDDQSIVTCAADGQVRHAQILNSGHVETSLLGNHLGRAHKLAIEPGSPYMFY 160 
WD40-rpts      _)(____________________WD 3___________________)(____________________WD 4________

Query      161 TCGEDGLVQRFDLRTGDAVELFTCQSVDNRAGYMSSIQLNAIVIDPRNPNLFVVAGSDEYARLYDIRKSGEDGSTDFGQL 240 
WD40-rpts      ___________)            (__________________WD 5_________________)               

Query      241 ADCYCPPHLIGDEQVGITGLAFSELSELLVSYNDESIYLFNRDMGLGPNPNPVPPLSLSSDASEMGAENVDNGIPQVYKG 320 
WD40-rpts                                      (____________________WD 6____________________)(_

Query      321 HRNCETVKGVNFFGPKCEYVVSGSDCGRIFIWRKKGGDLIRVMEADEDVVNCIEPHPHMTMLASSGIESDVKIWTPKAHE 400 
WD40-rpts      ______________WD 7______________)   (_________________WD 8________________)     

Query      401 RATLPEKIEQKPKPRGWMHRLALPEELMMQLFSLRRQTSSPESGREPPTVSRELLELIRTFNNGNSDDSSDYNDDSGEDD 480 
WD40-rpts                                         (_________________WD 9________________)      

9 WD40-repeats found in QUERY=CsaV3_7G001260 (Len=480):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-39       2.80  230.23  0.04805       12.5%     38.08
  WD 2:  Seg  4    44-82       8.51  466.10  3.2e-05       35.0%     51.50
  WD 3:  Seg  8    83-127      6.71  391.89  0.00033       25.0%     54.73
  WD 4:  Seg 12   128-172      6.52  383.93  0.00042       17.5%     52.01
  WD 5:  Seg 17   185-225      6.25  372.71  0.00059       12.5%     39.92
  WD 6:  Seg 22   273-318      6.95  401.95  0.00024       20.0%     26.07
  WD 7:  Seg 25   319-353      5.50  341.80  0.00154       25.0%     42.73
  WD 8:  Seg 28   357-395      8.90  482.16  2.0e-05       20.0%     57.36
  WD 9:  Seg 31   436-474      3.91  276.29  0.01171       15.0%     10.63

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-39     MNK---R----AR-------IDDSNKAVVNVWKRE--V-GELS-TRNFAHRLGALED
   WD 2   44-82     -LD---L----YKK------LERHKGCVNTVSFNA--A-GDIL-VSGSDDRRVILWN
   WD 3   83-127    WETGRVK----LSF------QSGHNNNVFQAKIMPYTD-DQSI-VTCAADGQVRHAQ
   WD 4  128-172    ILN---SGHVETSL------LGNHLGRAHKLAIEP--G-SPYMFYTCGEDGLVQRFD
   WD 5  185-225    QSV---D----NRA------GYMSSIQLNAIVIDP--RNPNLF-VVAGSDEYARLYD
   WD 6  273-318    NDE---S----IYLFNRDMGLGPNPNPVPPLSLSS--D-ASEM-GAENVDNGIPQVY
   WD 7  319-353    KGH------------------RNCETVKGVNFFGP--K-CEYV-VSGSDCGRIFIWR
   WD 8  357-395    -GD---L----IRV------MEADEDVVNCIEPHP--H-MTML-ASSGIESDVKIWT
   WD 9  436-474    -RQ---T----SSP------ESGREPPTVSRELLE--L-IRTF-NNGNSDDSSDYND

   WD40 Template    TGE---C----LRT------LSGHTSGVTSVSFSP--D-GKRL-VSGSEDGTIKVWD