Input parameters:

  Query = CsaV3_6G014950 (Len=1033)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CsaV3_6G014950, Len=1033):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MIAEKPSWVRHEGMQIFSIDVQPGGLRFATGGGDHKVRIWNVKSVGRSLEDDDSNQRLLATLRDHFGSVNCVRWAKHGRY 80  
WD40-rpts        (_________________WD 1________________)              (_________________WD 2___

Query       81 VASGSDDQTILVHEKKPGSGTTEFGSGEPPDVENWKVAMTLRGHTADVVDLNWSPDDSTLASGSLDNTVHIWNMSNGICT 160 
WD40-rpts      _____________)                    (_________________WD 3________________)   (___

Query      161 AVLRGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWTKSLGSTFFRRLGWSPCGHFITTTHGFQKPR 240 
WD40-rpts      ______________WD 4________________)          (________________WD 5______________

Query      241 HSAPVLERGEWSATFDFLGHNAPVIVVKFNHSMFRRNLTNTNEMKAVPVGWTNGASKIGGKESPSYNVIAIGSQDRTITV 320 
WD40-rpts      __)                                        (_________________WD 6_______________

Query      321 WTTASPRPLFVAKHFFTQSVVDLSWSPDGYSLFACSLDGSVATFHFEVKEIGQRLPDAELDEIKRSRYGDVRGRQVNLAE 400 
WD40-rpts      _)(___________________WD 7__________________)(___________________WD 8___________

Query      401 TPAQLMLEAASLKQVSSKKVVSETQQNQTPAKPSIDARDAAKTLEPQVDDSKKTCGAGGDSLNKVSSAPPKISSPVKQRE 480 
WD40-rpts      _______)(______________________WD 9_____________________)                       

Query      481 YRRPDGRKRIIPEAVGVPVQQENKSGGIQSSNAIDFPSLSLDQKKDNNGVSAPEFVRESFVRGAPRPSKHTDSKERIGVT 560 
WD40-rpts                                                                                      

Query      561 ARTTITDSLVIDKVPLSAGKDENIIMDHPGNLKTSSSLATCSSVLSIRVFDKKEGEYNEPICLEARPKEHAANDIIGAGN 640 
WD40-rpts                                                                                      

Query      641 TSMLKETVISCTKGSRILWSDRVSGKVTVLAGNANFWAVGCEDGCLQVYTKCGRRSMPTMMMGSAATFIDCDDCWKLLLV 720 
WD40-rpts                  (________________WD10________________)(_________________WD11________

Query      721 TRKGSLYVWDLFNRGCLLHDSLASLIPLNPNSSTKDSGTIKVISAKLSKSGSPLVVLATRHAFLFDMSLMCWLRVADDCF 800 
WD40-rpts      _________)                                                                      

Query      801 PASNFSSSWNLGSIQSGELAALQVDIRKYLARKPGWSRVTDDGMQTRAHLETQMASALALKSPNEYRQWLLSYIRFLARE 880 
WD40-rpts                                                                                      

Query      881 ADESRLREVCESLLGPPTGMAGDALADSKNQAWDPCVLGMRKHKLLREDILPAMASNRKVQRLLNEFMDLLSEYENNENN 960 
WD40-rpts                                                                                      

Query      961 IDPKASLPASSSLLEPDHEHSAPQQADKMETDPTLKDSSELVIDQTSLAPPVAPVDLGQPVKNLINLASEAKN 1033
WD40-rpts                                                                               

11 WD40-repeats found in QUERY=CsaV3_6G014950 (Len=1033):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     3-41       7.47  423.37  0.00012       20.0%     47.35
  WD 2:  Seg  4    56-94       7.96  443.36  6.6e-05       35.0%     51.47
  WD 3:  Seg  8   115-153      8.61  470.27  2.9e-05       40.0%     56.91
  WD 4:  Seg 12   157-195      9.44  504.54  9.9e-06       37.5%     55.52
  WD 5:  Seg 17   206-243      3.99  279.56  0.01059       12.5%     32.45
  WD 6:  Seg 23   284-322      6.50  383.36  0.00042       30.0%     47.57
  WD 7:  Seg 27   323-365      7.10  408.08  0.00020       30.0%     58.18
  WD 8:  Seg 31   366-408      3.66  265.77  0.01620       10.0%     41.11
  WD 9:  Seg 34   409-457      4.37  295.24  0.00652       15.0%      7.56
  WD10:  Seg 38   653-690      4.87  315.67  0.00346       20.0%     45.41
  WD11:  Seg 42   691-730      4.42  297.11  0.00615       15.0%     43.61

Multiple sequence alignment of 11 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    3-41     -AE---------KPSWVRHEGMQIFSID--VQPGGLRFATGGGDHKVRIWN
   WD 2   56-94     -QR---------LLATLRDHFGSVNCVR--WAKHGRYVASGSDDQTILVHE
   WD 3  115-153    -WK---------VAMTLRGHTADVVDLN--WSPDDSTLASGSLDNTVHIWN
   WD 4  157-195    -GI---------CTAVLRGHSSLVKGVA--WDPIGSFIASQSDDKTVIIWR
   WD 5  206-243    DGH---------WTKSLG--STFFRRLG--WSPCGHFITTTHGFQKPRHSA
   WD 6  284-322    ------------MKAVPVGWTNGASKIGGKESPSYNVIAIGSQDRTITVWT
   WD 7  323-365    TAS------PRPLFVAKHFFTQSVVDLS--WSPDGYSLFACSLDGSVATFH
   WD 8  366-408    FEV------KEIGQRLPDAELDEIKRSR--YGDVRGRQVNLAETPAQLMLE
   WD 9  409-457    AASLKQVSSKKVVSETQQNQTPAKPSID--ARDAAKTLEPQVDDSKKTCGA
   WD10  653-690    KGS-----------RILWSDRVSGKVTV--LAGNANFWAVGCEDGCLQVYT
   WD11  691-730    KCG---------RRSMPTMMMGSAATFI--DCDDCWKLLLVTRKGSLYVWD

   WD40 Template    TGE---------CLRTLSGHTSGVTSVS--FSPDGKRLVSGSEDGTIKVWD