WDRR: WD40 Repeat Recognition
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| JobID: SQT951659462047 Submitted: 2022-08-03 01:40:47 You can bookmark this page for further accessing the result in the future. Results on this server will be retained for 30 days. Job status: [Done] Total run time: 79787198 seconds. [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = CmaCh05G012780 (Len=1230) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (CmaCh05G012780, Len=1230): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MQQQQQQLLLGKASRRLGTSLKREIIEVFCVSLGQALGAIVKIPHPFTYTVPALITLSFFLLHICLSHASPPDINMSSLS 80
WD40-rpts
Query 81 RELVFLILQFLDEEKFKETVHKLEQESGFFFNIRYFEDMVTNGEWEEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEAL 160
WD40-rpts
Query 161 DKRDRAKAVDILVKDLKVFSAFNEELFKEITQLLTLDNFRNNEQLSKYGDTKSARGIMLAELKKLIEANPLFRDTLQFPT 240
WD40-rpts
Query 241 LKNSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHSCGQPNGARAPSPVTNPLLGAVPKAAAFPPMSAHGPFQPTPAA 320
WD40-rpts
Query 321 LPTSLAGWMANPSPMPHPSASAGPIGLNAANNAAAILKRPRTPPANNPTMDYQTADSEHVLKRARPFGLSEEVNNLPVNI 400
WD40-rpts
Query 401 LPIGFANQGHGQSSYSSDDLPKNVVTTLSQGSVVKSMDFHPQQQTILLVGTQVGDVMIWEVGCRERIAIRNFKVWDLSAC 480
WD40-rpts (_________________WD 1_________________)
Query 481 SAPLQASLASDYTASINRVMWSPDGTXFFIFFFFFFFGSFLDYFQHPGVAYSKHIVHIYSYQAGDELRNHLEIEAHVGSV 560
WD40-rpts (_________________WD 2________________) (_____________
Query 561 NDLAFSYPNKQLCLVTCGEDRVIKVWDAVTGVKQFTFEGHDAPVYSVCPHHKENIQFIFSTAADGQIKAWLYDNVGSRVD 640
WD40-rpts _____WD 3_________________) (__________________WD 4_________________) (_____
Query 641 YDAPGHSSTTMAYSADGTRLFSCGTNKEGESYLVEWNESEGAVKRTYQGIGKRSVGVVQFDTTKNRFLAAGDDFSVKIWD 720
WD40-rpts ______________WD 5__________________) (_________________WD 6_________________)
Query 721 MDSVNLLTSIDADGGLPASPCIRFNKDGVLLAVSTNDNGIKILANAEGIRMLRTVENRTFDASRAAASAAVVKAPPIGSF 800
WD40-rpts (__________________WD 7_________________)(_________________WD 8______________
Query 801 GPTAVTVGMSIGDRTAPVAAMVGINNDSRGLADVKPRIADESADKSRIWKLTEINEPTQCRSLRLADNLTASRLEMRLIY 880
WD40-rpts ___) (___________________WD 9
Query 881 TNSGLAILALASNAVHKLWKWQRNDRTVTGKATASVAPQLWQPSSGILMTNDISDTNPEDAVPCFALSKNDSYVMSASGG 960
WD40-rpts ___________________) (___________________WD10______________
Query 961 KISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNQLNVLVS 1040
WD40-rpts _____) (_________________WD11_________________) (_________________WD12______
Query 1041 SGADSQLCVWSTDGWEKQVSKFLQFPSGRTAPPVADTRVQFHVDQTHLLVIHETQIAIYEAPKLECLKQWLPREVSGPIT 1120
WD40-rpts __________) (__________________WD13_________________) (________________
Query 1121 HATFSCDSQSIYVSFEDGSVGVLTASTLRLRCRINPNAYLSSNPSLRVHPLVIAAHPSEPNQFALGLSDGGVIVLEPSES 1200
WD40-rpts __WD14_________________)(_______________________WD15_______________________)
Query 1201 EGKWGTSPPVENGAGPITASGTTGPDQPQR 1230
WD40-rpts
 15 WD40-repeats found in QUERY=CmaCh05G012780 (Len=1230): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 7 421-460 6.73 392.75 0.00032 25.0% 58.00 WD 2: Seg 13 502-540 4.24 289.91 0.00769 5.0% 26.06 WD 3: Seg 17 547-587 7.08 407.06 0.00020 35.0% 51.95 WD 4: Seg 21 591-631 7.27 415.05 0.00016 32.5% 58.28 WD 5: Seg 25 635-677 6.23 372.10 0.00060 20.0% 57.68 WD 6: Seg 29 681-720 7.60 428.59 0.00010 30.0% 58.30 WD 7: Seg 33 724-764 6.37 377.87 0.00050 22.5% 57.87 WD 8: Seg 37 765-804 3.70 267.44 0.01539 15.0% 22.71 WD 9: Seg 45 857-900 5.57 344.77 0.00140 15.0% 48.44 WD10: Seg 51 923-966 4.53 301.94 0.00530 15.0% 45.30 WD11: Seg 55 970-1009 6.99 403.30 0.00023 22.5% 59.65 WD12: Seg 59 1013-1051 8.87 481.24 2.0e-05 32.5% 59.06 WD13: Seg 63 1060-1100 4.12 284.81 0.00900 25.0% 44.09 WD14: Seg 67 1104-1144 6.60 387.34 0.00037 27.5% 59.49 WD15: Seg 71 1145-1196 3.76 269.88 0.01427 17.5% 36.22Multiple sequence alignment of 15 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 421-460 -PKNV--------------VTT--L--S-QGS---VVKS-----M--DFHP-QQQT-ILLVGTQVGD----VMIWE WD 2 502-540 SPDGT---------------XF--F--I-FFF---FFFF-----G--SFLD-YFQH--PGVAYSKHI----VHIYS WD 3 547-587 -LRNH--------------LEI--E--A-HVG---SVND-----L--AFSY-PNKQLCLVTCGEDRV----IKVWD WD 4 591-631 -GVKQ--------------FTF--E--G-HDA---PVYS-----VCPHHKE-NIQF--IFSTAADGQ----IKAWL WD 5 635-677 -VGSR--------------VDY--D--A-PGH---SSTT-----M--AYSA-DGTR--LFSCGTNKEGESYLVEWN WD 6 681-720 -GAVK--------------RTY--Q--GIGKR---SVGV-----V--QFDT-TKNR--FLAAGDDFS----VKIWD WD 7 724-764 -VNLL--------------TSI--DADG-GLP---ASPC-----I--RFNK-DGVL--LAVSTNDNG----IKILA WD 8 765-804 NAEGI--------------RML--R--T-VEN---RTFD-----A--SRAA-ASAA--VVKAPPIGS----FGPTA WD 9 857-900 -PTQC--------------RSL--R--L-ADN---LTASRLEMRL--IYTN-SGLA--ILALASNAV----HKLWK WD10 923-966 PSSGI---------LMTNDISD--T--N-PED---AVPC-----F--ALSK-NDSY--VMSAS-GGK----ISLFN WD11 970-1009 -FKTM--------------TTF--M--P-PPP---AATF-----L--AFHPQDNNI--IAIGMEDSS----IQIYN WD12 1013-1051 -DEVK--------------TKL--K--G-HQK---RITG-----L--AFSN-QLNV--LVSSGADSQ----LCVWS WD13 1060-1100 -SKFL--------------QFP--S--G-RTAPPVADTR-----V--QFHV-DQTH--LLVIH-ETQ----IAIYE WD14 1104-1144 -LECL--------------KQWLPR--E-VSG---PITH-----A--TFSC-DSQS--IYVSFEDGS----VGVLT WD15 1145-1196 ASTLRLRCRINPNAYLSSNPSL--R--V-HPL---VIAA-----H--PSEP-NQ----FALGLSDGG----VIVLE WD40 Template TGECL--------------RTL--S--G-HTS---GVTS-----V--SFSP-DGKR--LVSGSEDGT----IKVWD |
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