Input parameters:

  Query = sp_O65418_APC4_ARATH (Len=777)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (sp_O65418_APC4_ARATH, Len=777):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSEMASDEEENIIPFQLQFDKPIPFQIKIAEWNPEKDLLAMVTEDSKILLHRFNWQRLWTISPGKPVTSLCWRPDGKAIA 80  
WD40-rpts      (_______________________WD 1_______________________)(_________________WD 2______

Query       81 VGLEDGTISLHDVENGKLLRNLKPHDVAVVCLNWEEDGQSNTDESGNFSVYEDRTSRFFPPAPRPPKMPGLVAGDSSFMD 160 
WD40-rpts      ___________)   (_________________WD 3________________)                          

Query      161 DGEDSLAELSNTSFRKFNILCTGDRDGNICFSIFGIFQIGKINIHELSLPVPHLDEHASCKLFNASIYKVALSKDLCRLV 240 
WD40-rpts                                                           (_________________WD 4_____

Query      241 VMCTGELKDCDIKPREEKINVQDLPGLHCLAMDTSIFWKRKYELHQVAQQASNIEDLTEVIRASLSVMNKQWADAMKTFH 320 
WD40-rpts      ___________)                                                                    

Query      321 EKFHSLSTLIIDNGLESSPQEEFLSLLGGARISPALNQFLVNSLGEVGVKRVLKSVCGTGKELQQVVLDHLQPAAEIIGF 400 
WD40-rpts                                                                                      

Query      401 RIGELRGLSRWRARYQGIGLDEMLLNEATENTGLLLVQVQRFMMVLSSVVQQFSNFFNWLVRSIKYLMQEPNDQLLSYNS 480 
WD40-rpts                                                                                      

Query      481 ELLVVFLKFLYDQDPVKDLLELSEAGDDIEIDLKTIGRVKELLQFGGFSECDFLQRTLAKEFQHMESSFKMAFQMPFTTI 560 
WD40-rpts                                                                                      

Query      561 SRKISCMKLLPLCPLQLSTTQTPTTIPMSLSFYKNELSDDTPCQSGYTDYISFQVPDETFPEISNCIGIAKGYKQNSNNE 640 
WD40-rpts                                                                                      

Query      641 KNGYTSLEAVLLSVPNGYTCVDLSLYKDKELVLLLNKTNTDSEGSGEACMMVVQTGDLAFISISGSSSLNQWELEDLKGS 720 
WD40-rpts                                                                                      

Query      721 IVNLEMENEKVRKVPHSVIAPLAVSASRGVACVFAERRRALVYILEEDEDEEISDEK 777 
WD40-rpts                                                               

4 WD40-repeats found in QUERY=sp_O65418_APC4_ARATH (Len=777):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-52       3.81  272.13  0.01332       17.5%     51.18
  WD 2:  Seg  5    53-92       7.25  414.11  0.00016       35.0%     57.66
  WD 3:  Seg  9    96-134      4.77  311.51  0.00394       22.5%     30.55
  WD 4:  Seg 15   214-252      3.92  276.41  0.01167       15.0%     33.38

Multiple sequence alignment of 4 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-52     MSEMASDEEENIIPFQLQFDKPIPFQIKIAEWNPEKDLLAMVTEDSKILLHR
   WD 2   53-92     FNWQ------------RLWTISPGKPVTSLCWRPDGKAIAVGLEDGTISLHD
   WD 3   96-134    -GKL------------LRNLKPHDVAVVCLNWEEDGQSNTDESGNFSVYEDR
   WD 4  214-252    -LDE------------HASCKLFNASIYKVALSKDLCRLVVMCTGELKDCDI

   WD40 Template    TGEC------------LRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD