Input parameters:

  Query = CsaV3_7G029030 (Len=420)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CsaV3_7G029030, Len=420):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 METLSAFPSPPWPNPNPNSNPSPNPNPNPNPNPPSAVADSSSSERFDSDSVSSVDPTGLSPAVEPPASQPSLLHLSFNQD 80  
WD40-rpts                                                                                      

Query       81 HGCFAAGTDRGFRIYNCDPFREIFRRDFDRGGGVGVVEMLFRCNILALVGGGPDPQYPPNKVMIWDDHQSRCIGELSFRS 160 
WD40-rpts                          (____________________WD 1____________________)   (__________

Query      161 AVRGVRLQRDRIIVILEQKVFVYNFADLKLLHQIETIANPKGLCAVSQLSTSLVLVCPGLQKGQVRVEHYASRRTKFIMA 240 
WD40-rpts      _____WD 2______________)   (__________________WD 3__________________)  (________

Query      241 HDSRIACFALTTNGQLLATASTKGTLVRIFNTFDGNLLQEVRRGADRAEIYSLAFSSTAQWLAVSSDKGTVHVFSLKVNS 320 
WD40-rpts      _________WD 4_________________)   (__________________WD 5_________________)   (_

Query      321 GSLGNDMSHQNDSSLSVAPSGSSFSFIKGVLPKYFKSEWSVAQFRLHEGSQYVVAFGHQKNTVVILGMDGSFYRCQFDSV 400 
WD40-rpts      ______________WD 6_______________)  (_________________WD 7_________________)    

Query      401 NGGEMTQLEYHNFLMPEEAF 420 
WD40-rpts                          

7 WD40-repeats found in QUERY=CsaV3_7G029030 (Len=420):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  4   101-146      4.62  305.46  0.00475       20.0%     41.32
  WD 2:  Seg  8   150-184      3.50  259.04  0.01993       17.5%     42.42
  WD 3:  Seg 12   188-229      5.37  336.45  0.00182       12.5%     44.91
  WD 4:  Seg 16   232-271      7.39  419.83  0.00014       17.5%     55.11
  WD 5:  Seg 20   275-315      7.47  423.24  0.00012       25.0%     54.51
  WD 6:  Seg 24   319-354      4.01  280.42  0.01031       15.0%      8.41
  WD 7:  Seg 26   357-396      8.06  447.62  5.8e-05       15.0%     58.47

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  101-146    -REIFRRDFDRG--GGVGVVEMLFRCN---ILALVGGGPDPQYPPNK-VMIWD
   WD 2  150-184    -SRCIGEL-SFR--SAVRGVRLQRDRI---IVI-------L---EQK-VFVYN
   WD 3  188-229    -LKLLHQIETIA--NPKGLCAVSQLSTSLVLVC-------PGLQKGQ-VRVEH
   WD 4  232-271    -SRRTKFIMAHD--SRIACFALTTNGQ---LLA-------TASTKGTLVRIFN
   WD 5  275-315    -GNLLQEVRRGADRAEIYSLAFSSTAQ---WLA-------VSSDKGT-VHVFS
   WD 6  319-354    -NSGSLGNDMSH--QNDSSLSVAPSG------S-------SFSFIKG-VLPKY
   WD 7  357-396    SEWSVAQFRLHE--GSQYVVAFGHQKN---TVV-------ILGMDGS-FYRCQ

   WD40 Template    TGECLRTLSGHT--SGVTSVSFSPDGK---RLV-------SGSEDGT-IKVWD