Input parameters:

  Query = CmaCh10G003200 (Len=327)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CmaCh10G003200, Len=327):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAEGLVLRGTMRAHTDMVTAIATPIDNSDMIVTSSRDKSIILWRLTKEEKTYGVPQRRLNGHSHFVQDVVLSSDGQFALS 80  
WD40-rpts      (___________________WD 1___________________)        (_________________WD 2______

Query       81 GSWDGELRLWDLATGVTSRRFVGHSKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQDGDAHSDWVSCVRFSPN 160 
WD40-rpts      __________)   (_________________WD 3________________)     (__________________WD 

Query      161 TLQPTIVSASWDKTVKVWNLTNCKLRVTLAGHGGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKKLYSLDAGSIIHAL 240 
WD40-rpts      4_________________)   (_________________WD 5________________)   (_______________

Query      241 CFSPNRYWLCAATESSIKIWDLESKSIVEDLKVDLKTEAEKTDDTHAATTNKIKDIYCTSLSWSADGSTLFSGYTDGVIR 320 
WD40-rpts      _WD 6_______________)                       (_________________WD 7______________

Query      321 VWGIGRY 327 
WD40-rpts      __)    

7 WD40-repeats found in QUERY=CmaCh10G003200 (Len=327):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-44       7.92  441.72  6.9e-05       30.0%     55.06
  WD 2:  Seg  5    53-91      10.01  528.11  4.7e-06       42.5%     53.76
  WD 3:  Seg  9    95-133     10.56  550.83  2.3e-06       45.0%     56.98
  WD 4:  Seg 13   139-179      8.43  462.91  3.6e-05       35.0%     53.84
  WD 5:  Seg 17   183-221     10.31  540.38  3.2e-06       42.5%     54.51
  WD 6:  Seg 21   225-261      6.16  369.07  0.00066       30.0%     52.78
  WD 7:  Seg 25   285-323      7.67  431.64  9.5e-05       37.5%     46.74

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-44     MAEGLVLRGTMRAHTDMVTAIATPIDN-SDMIVTSSRDKSIILWR
   WD 2   53-91     -GV---PQRRLNGHSHFVQDVVLSSDG--QFALSGSWDGELRLWD
   WD 3   95-133    -GV---TSRRFVGHSKDVLSVAFSIDN--RQIVSASRDRTIKLWN
   WD 4  139-179    -KY---TIQDGDAHSDWVSCVRFSPNTLQPTIVSASWDKTVKVWN
   WD 5  183-221    -CK---LRVTLAGHGGYVNTVAVSPDG--SLCASGGKDGVILLWD
   WD 6  225-261    -GK---KLYSLDAG-SIIHALCFSPNR--YWLCAAT-ESSIKIWD
   WD 7  285-323    -TH---AATTNKIKDIYCTSLSWSADG--STLFSGYTDGVIRVWG

   WD40 Template    TGE---CLRTLSGHTSGVTSVSFSPDG--KRLVSGSEDGTIKVWD