Input parameters:

  Query = gi_262233415_gb_ACY38730.1_ (Len=754)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (gi_262233415_gb_ACY38730.1_, Len=754):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MHRVASSGSNGGSVRNRKEKKLTYVLNDANDSKHCAGVNCLDVLKSSVSSDRSYLFTGSRDGTLKRWAFDEDASFCSATF 80  
WD40-rpts                        (______________________WD 1______________________)     (______

Query       81 ESHVDWVNDAALAGESTLVSCSSDTTVKTWDSLSDGACTRTFRQHTDYVTCLAVAAKNNNVVASGGLGGEVFIWDIGAAL 160 
WD40-rpts      __________WD 2________________)    (_________________WD 3_________________)   (_

Query      161 SPVTKPNDAMEESSTNGLGNSQPVTSLRNVGSSNNISVQSSPSHGYAPTIAKGHKESVYALAMNDAGTMLVSGGTEKVLR 240 
WD40-rpts      __________________WD 4__________________)   (_________________WD 5______________

Query      241 VWDPRSGSKTMKLRGHTDNVRVLLLDSTGRFCLSGSSDSMIRLWDLGQQRCLHTYAVHTDSVWALACTPSFTHVYSGGRD 320 
WD40-rpts      __)   (_________________WD 6________________)   (_________________WD 7__________

Query      321 QSLYLTDLATRESVLMCTKEHPIQQLALQDDSIWVATIDSSVERWPAEVQSPEKVFQRGGSFLAGNLSFNRARVSLEGLN 400 
WD40-rpts      ______)  (________________WD 8_______________)    (_________________WD 9________

Query      401 PPPAYKEPLMTIPGSHPIVQHEILNNKRQILTKDAGDSVKLWDITKGVVVEDFGKISFEEKKEELFEMVSIPSWFTVDTR 480 
WD40-rpts      ________)_______________WD10______________)                                   (_

Query      481 LGCLSLHLETPQCFSAEMYSADLKVSGRPEDDKINLGRETLKGLLGHWMAKKKHKPKPQALTSGDVLSVKDTKKNLNASK 560 
WD40-rpts      ________________WD11________________)    (______________WD12_____________)      

Query      561 SEDSSAGNDPVYPPFEFPSISPPSIITEGSQGGPWRKKITEFTGTEDEKDFPLWCLDAVLNNRLPPRENTKLSFFLHPCE 640 
WD40-rpts                                                                                      

Query      641 GSNVQVVTLGKLSAPRILRVHKVTNYVVEKMVLDSPLDSLAIDGASVSGGPQQLFAGYGLLTAGSKPWQKLRPSIEILCN 720 
WD40-rpts                                                                                      

Query      721 NQVLSPEWSLATVRTFVWKKPEDLILNYRVAVAK 754 
WD40-rpts                                        

12 WD40-repeats found in QUERY=gi_262233415_gb_ACY38730.1_ (Len=754):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3    19-68       7.12  408.75  0.00019       40.0%     57.29
  WD 2:  Seg  7    74-111      7.71  433.30  9.0e-05       32.5%     48.63
  WD 3:  Seg 11   116-155      8.05  447.05  5.9e-05       32.5%     54.64
  WD 4:  Seg 15   159-201      3.31  251.35  0.02523       15.0%     39.09
  WD 5:  Seg 19   205-243      9.11  491.08  1.5e-05       30.0%     54.07
  WD 6:  Seg 23   247-285      9.50  507.22  9.1e-06       35.0%     56.42
  WD 7:  Seg 27   289-327      8.84  479.69  2.1e-05       27.5%     57.74
  WD 8:  Seg 31   330-366      5.04  322.84  0.00277        7.5%     51.35
  WD 9:  Seg 35   371-409      4.17  286.90  0.00844       12.5%     33.50
  WD10:  Seg 38   409-443      5.58  345.25  0.00138       17.5%     52.43
  WD11:  Seg 46   479-517      6.71  391.75  0.00033       17.5%     45.63
  WD12:  Seg 50   522-554      4.73  310.03  0.00412       17.5%     34.44

Multiple sequence alignment of 12 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   19-68     EKKLTYVLNDANDSKHC---AGVNCLDVLKSSVSS-DRSYLFT-GSRDGTLKRWA
   WD 2   74-111    -SFCSATF-----ESHV---DWVN-----DAALAG-EST-LVS-CSSDTTVKTWD
   WD 3  116-155    -GACTRTF-----RQHT---DYVT-----CLAVAAKNNNVVAS-GGLGGEVFIWD
   WD 4  159-201    -ALSPVTK-----PNDAMEESSTN-----GLGNSQ-PVTSLRNVGSSNNISVQSS
   WD 5  205-243    -GYAPTIA-----KGHK---ESVY-----ALAMND-AGTMLVS-GGTEKVLRVWD
   WD 6  247-285    -GSKTMKL-----RGHT---DNVR-----VLLLDS-TGRFCLS-GSSDSMIRLWD
   WD 7  289-327    -QRCLHTY-----AVHT---DSVW-----ALACTP-SFTHVYS-GGRDQSLYLTD
   WD 8  330-366    -TRESVLM-----CTKE---HPIQ-----QLALQD-DS--IWV-ATIDSSVERWP
   WD 9  371-409    -SPEKVFQ-----RGGS---FLAG-----NLSFNR-ARVSLEG-LNPPPAYKEPL
   WD10  409-443    ----LMTI-----PGSH---PIVQ-----HEILNN-KR-QILT-KDAGDSVKLWD
   WD11  479-517    TRLGCLSL-----HLET---PQCF-----SAEMYS-ADLKVSG-RPEDDKINLG-
   WD12  522-554    -----KGL-----LGHW-----MA-----KKKHKP-KPQALTS-GDVLSVKDTKK

   WD40 Template    TGECLRTL-----SGHT---SGVT-----SVSFSP-DGKRLVS-GSEDGTIKVWD