Input parameters:

  Query = CsaV3_1G030980 (Len=708)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CsaV3_1G030980, Len=708):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MGVAAAQWLDAYIYDYLLKRKLYTSARSFLAEGKILRDPVAFDAPGGFLLEWWSVFWDLFIARINPQHSEAATSYIKSQL 80  
WD40-rpts                                                                                      

Query       81 LKDGDLQLQQQHYLQKTQQSSTPIANRLVLNNSLNIQNPSVANEMAAKMYEENFTLPIQRDTLANVLPKKRFLKHVSQRP 160 
WD40-rpts                                                                                      

Query      161 GSMFGVSAMNAQPLSQSQISGYKSTSIDTQYQSQQLPGSKKLKGEMKSSMNTRVSTAEGIAGSNPGTSRLPLNGRPSSGL 240 
WD40-rpts                                                                                      

Query      241 DPLSLGQQQQPNSFIQLPHTSSRFQLEHEFIFQAPQNLGVDSANVACIRPGVPLSQNIHMKDSHLCSMDLSDVDSMAPVC 320 
WD40-rpts                                                                         (____________

Query      321 HPALPHVSADMLNKHPILSQHSQNSNHIIQQQDKLTSSGITNVDGCTSNKFQANNQADMGCLMDDEPLDDVESFLSLNES 400 
WD40-rpts      _____________WD 1________________________)  (_____________________WD 2__________

Query      401 DERDNLGLLSDSTKGPTLKEIHVIPANTRKVECCCFSSDGKLLASGGSDKKATVWCTKSFKVRSTLDEHSQWITDVRFSP 480 
WD40-rpts      __________)      (_________________WD 3________________)   (_________________WD 

Query      481 RTLKIATSSGDGTVKVWDVDNHGQSLRTFTGHSTGVASLDFHPSKDDLICSSDISSEIRYWSIKNGSCVGIFKGGATKLR 560 
WD40-rpts      4________________)    (_________________WD 5_________________)   (______________

Query      561 FQPNNGRTLAAAAGKVVSIIDVETQVCRLRLQGHKKKIHSVCWDPSGEYLASTSDDVAKVWKFGSGSKGDCIHELNCNGN 640 
WD40-rpts      _WD 6_______________)   (________________WD 7________________)      (___________

Query      641 TFHTCVFHPTNTSVLIIGSHESLELWDMTENKTRTLQAHEKLVTALAASNATGLIASASHDDCVKIWQ 708 
WD40-rpts      ______WD 8________________)(__________________WD 9_________________)

9 WD40-repeats found in QUERY=CsaV3_1G030980 (Len=708):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3   308-362      3.97  278.75  0.01086        2.5%     33.28
  WD 2:  Seg  6   365-411      5.72  350.80  0.00116        7.5%     18.51
  WD 3:  Seg  9   418-456      8.95  484.52  1.8e-05       32.5%     55.95
  WD 4:  Seg 13   460-498     10.33  541.19  3.2e-06       40.0%     55.62
  WD 5:  Seg 17   503-542      8.62  470.84  2.8e-05       37.5%     49.72
  WD 6:  Seg 21   546-581      7.03  405.24  0.00022       20.0%     50.96
  WD 7:  Seg 25   585-622      8.42  462.37  3.6e-05       37.5%     54.69
  WD 8:  Seg 29   629-667      8.33  458.91  4.1e-05       17.5%     56.11
  WD 9:  Seg 33   668-708      8.76  476.50  2.4e-05       32.5%     53.27

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  308-362    MDLSDVDSMAPVCHPALP-HVSADMLNKHPILSQHSQ-------NSNHII-QQQDKLTSSGITN
   WD 2  365-411    GC---------------T-SNKFQANNQADMGCLMDDEPLDDVESFLSLN-ESDERDNLGLLSD
   WD 3  418-456    -L---------------K-EIHVIPANTRKVECCCFS-------SDGKLL-ASGGSDKKATVWC
   WD 4  460-498    -F---------------K-VRSTLDEHSQWITDVRFS-------PRTLKI-ATSSGDGTVKVWD
   WD 5  503-542    -G---------------Q-SLRTFTGHSTGVASLDFH-------PSKDDLICSSDISSEIRYWS
   WD 6  546-581    -G---------------S-CVGIFKGG---ATKLRFQ-------PNNGRT-LAAAAGKVVSIID
   WD 7  585-622    -Q---------------V-CRLRLQGHKKKIHSVCWD-------PSGEYL-ASTS-DDVAKVWK
   WD 8  629-667    -G---------------D-CIHELNCNGNTFHTCVFH-------PTNTSV-LIIGSHESLELWD
   WD 9  668-708    MT---------------ENKTRTLQAHEKLVTALAAS-------NATGLI-ASASHDDCVKIWQ

   WD40 Template    TG---------------E-CLRTLSGHTSGVTSVSFS-------PDGKRL-VSGSEDGTIKVWD