WDRR: WD40 Repeat Recognition
| [HOME] [JOB LIST] [PRE-CALCULATED RESULTS] [VISITORS] [ABOUT] |
| JobID: SFVN51659505435 Submitted: 2022-08-03 13:43:55 You can bookmark this page for further accessing the result in the future. Results on this server will be retained for 30 days. Job status: [Done] Total run time: 79743956 seconds. [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = CmaCh19G006390 (Len=472) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (CmaCh19G006390, Len=472): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MREEQGRGAMMMERRSGLNRKRFGAYLQSDPAILAGDDDDLSPRHSNASTATSPVYNYEKSPASGEASPYLMSPWNQSAS 80
WD40-rpts (_________________WD 1_________________)
Query 81 PYSKSPWIVPSGINLYDDGFFARSGLVGSLVREEGHVYSLAVAGDLLYTGSDSKNIRVWKNLEEYAGFKSNSGLVKAIIL 160
WD40-rpts (________________WD 2_______________)(________________WD
Query 161 YGDRIFTGHQDGKIRIWKVSSKNPKYHSRIGSLPTLKEFVKSSMNPKNYVKVRRNRNVLRIKHFDAISSMSLNEELGLLY 240
WD40-rpts 3________________)(______________WD 4______________)(_________________WD 5______
Query 241 SGSWDKTMKVWRIADSKCLESIAAHDDAVNAVASGLESLVFTGSADGTVKVWRRELQGKGTKHFLVQVLLKQENAITALA 320
WD40-rpts ___________) (________________WD 6________________) (_________________
Query 321 VNKSSAVLYCGSSDGVVNYWESEKHLSHGGVLHGHKLAVLCLATAGNLVFSGSADKNICVWRREENSGSHTCLSVLTGHS 400
WD40-rpts WD 7________________)(__________________WD 8_________________) (__________
Query 401 GPVKCLAVKEDDEEECPSPPKEEDNGKKLYRRWIVYSGSLDRSVKVWRVVENASELLKLADADRPYLTYKKQ 472
WD40-rpts _______WD 9________________)
 9 WD40-repeats found in QUERY=CmaCh19G006390 (Len=472): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 1 8-47 7.65 430.78 9.7e-05 12.5% 46.08 WD 2: Seg 6 104-140 6.60 387.48 0.00037 25.0% 52.34 WD 3: Seg 10 141-178 8.46 464.25 3.4e-05 22.5% 53.71 WD 4: Seg 14 179-212 5.38 337.02 0.00179 15.0% 34.86 WD 5: Seg 17 213-252 9.59 510.96 8.1e-06 30.0% 55.01 WD 6: Seg 21 256-293 8.50 465.73 3.3e-05 32.5% 55.14 WD 7: Seg 25 303-341 8.54 467.57 3.1e-05 20.0% 55.12 WD 8: Seg 29 342-382 6.72 392.40 0.00032 32.5% 47.87 WD 9: Seg 33 390-428 7.00 403.92 0.00022 17.5% 19.41Multiple sequence alignment of 9 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 8-47 GAMMM---ERRSGLNRKRFGAYLQSDPAILAGDDDDLSPRHSN WD 2 104-140 -SGLV---GSLVREEGHVYSLAVAGD--LLYTGSDSKNIRVWK WD 3 141-178 NLEEY---AGFKSNSGLVKAIILYGD--RIFTGHQDGKIRIWK WD 4 179-212 ---------VSSKNPKYHSRIGSLPTLKEFVKSSMNPKNYVKV WD 5 213-252 RRNRN---VLRIKHFDAISSMSLNEELGLLYSGSWDKTMKVWR WD 6 256-293 -SKCL---ESIAAHDDAVNAVASGLES-LVFTGSADGTVKVWR WD 7 303-341 -HFLV---QVLLKQENAITALAVNKSSAVLYCGSSDGVVNYWE WD 8 342-382 SEKHLSHGGVLHGHKLAV--LCLATAGNLVFSGSADKNICVWR WD 9 390-428 -HTCL---SVLTGHSGPVKCLAVKEDDEEECPSPPKEEDNGKK WD40 Template TGECL---RTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD |
|
Copyright © 2012-2015 Ziding Zhang's Lab, China Agricultural University Powered and maintained by Chuan Wang Last modified: 09 Jan 2019 |