Input parameters:

  Query = Arabidopsis_thaliana (Len=317)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (Arabidopsis_thaliana, Len=317):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MPVFKAPFNGYSVKFSPFYESRLAVATAQNFGILGNGRIHVLELAPGAPGVTESVSYDTADAVYDVCWSESHDSVLIAAI 80  
WD40-rpts         (______________WD 1_____________)             (_________________WD 2_________

Query       81 GDGSVKIYDTALPPPSNPIRSFQEHAREVQSVDYNPTRRDSFLTSSWDDTVKLWAMDRPASVRTFKEHAYCVYQAVWNPK 160 
WD40-rpts      ________)      (_________________WD 3_________________)   (_________________WD 4

Query      161 HGDVFASASGDCTLRIWDVREPGSTMIIPAHDFEILSCDWNKYDDCILATSSVDKTVKVWDVRSYRVPLAVLNGHGYAVR 240 
WD40-rpts      _________________)   (_________________WD 5_________________)(__________________

Query      241 KVKFSPHRRSLIASCSYDMSVCLWDYMVEDALVGRYDHHTEFAVGIDMSVLVEGLMASTGWDELVYVWQQGMDPRAS 317 
WD40-rpts      _WD 6___________________)    (_________________WD 7_________________)        

7 WD40-repeats found in QUERY=Arabidopsis_thaliana (Len=317):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     4-36       3.71  267.85  0.01520       17.5%     41.37
  WD 2:  Seg  5    50-89       7.40  420.43  0.00013       22.5%     58.31
  WD 3:  Seg  9    96-135      8.30  457.43  4.3e-05       27.5%     53.93
  WD 4:  Seg 13   139-178      8.41  462.18  3.7e-05       30.0%     56.26
  WD 5:  Seg 17   182-221      8.17  452.25  5.0e-05       27.5%     54.61
  WD 6:  Seg 21   222-265      8.03  446.24  6.0e-05       35.0%     55.18
  WD 7:  Seg 25   270-309      6.89  399.07  0.00026       17.5%     54.72

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    4-36     -----------FKAPFNGYSVKFSP-FYES-RLAVATAQNFGILGN
   WD 2   50-89     -GV---TESVSYDTADAVYDVCWSE-SHDS-VLIAAIGDGSVKIYD
   WD 3   96-135    -SN---PIRSFQEHAREVQSVDYNP-TR-RDSFLTSSWDDTVKLWA
   WD 4  139-178    -PA---SVRTFKEHAYCVYQAVWNPKHG-D-VFASASGDCTLRIWD
   WD 5  182-221    -PG---STMIIPAHDFEILSCDWNKYDD-C-ILATSSVDKTVKVWD
   WD 6  222-265    VRSYRVPLAVLNGHGYAVRKVKFSP-HR-RSLIASCSYDMSVCLWD
   WD 7  270-309    -DA---LVGRYDHHTEFAVGIDMSV-LV-EGLMASTGWDELVYVWQ

   WD40 Template    TGE---CLRTLSGHTSGVTSVSFSP-DG-K-RLVSGSEDGTIKVWD